Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2315855..2316126 | Replicon | chromosome |
| Accession | NC_013941 | ||
| Organism | Escherichia coli O55:H7 str. CB9615 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2315893..2315996 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2315855..2316126 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G2583_RS11705 | 2313012..2314451 | + | 1440 | WP_001419087.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| G2583_RS11710 | 2314569..2314805 | + | 237 | WP_001359800.1 | DUF1480 family protein | - |
| G2583_RS11715 | 2314910..2315101 | + | 192 | WP_001296140.1 | YebW family protein | - |
| G2583_RS11720 | 2315102..2315758 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 2315855..2316126 | + | 272 | - | - | Antitoxin |
| - | 2315893..2315996 | - | 104 | - | - | Toxin |
| G2583_RS11730 | 2316154..2316495 | - | 342 | WP_000976483.1 | YebY family protein | - |
| G2583_RS11735 | 2316508..2317380 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| G2583_RS11740 | 2317384..2317758 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| G2583_RS11745 | 2317897..2318127 | + | 231 | WP_000916769.1 | DNA polymerase III subunit theta | - |
| G2583_RS11750 | 2318229..2318885 | + | 657 | WP_000011661.1 | carbon-nitrogen hydrolase family protein | - |
| G2583_RS11755 | 2318909..2319571 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T24610 NC_013941:c2315996-2315893 [Escherichia coli O55:H7 str. CB9615]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT24610 NC_013941:2315855-2316126 [Escherichia coli O55:H7 str. CB9615]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
