Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2205908..2206179 | Replicon | chromosome |
| Accession | NZ_CP097716 | ||
| Organism | Escherichia coli strain MS1718 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2206038..2206141 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2205908..2206179 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M9O77_RS10530 | 2202463..2203125 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| M9O77_RS10535 | 2203149..2203805 | - | 657 | WP_000011663.1 | carbon-nitrogen hydrolase family protein YobB | - |
| M9O77_RS10540 | 2203907..2204137 | - | 231 | WP_077516099.1 | DNA polymerase III subunit theta | - |
| M9O77_RS10545 | 2204276..2204650 | + | 375 | WP_000168737.1 | CopC domain-containing protein YobA | - |
| M9O77_RS10550 | 2204654..2205526 | + | 873 | WP_000879323.1 | copper homeostasis membrane protein CopD | - |
| M9O77_RS10555 | 2205539..2205880 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2205908..2206179 | - | 272 | - | - | Antitoxin |
| - | 2206038..2206141 | + | 104 | - | - | Toxin |
| M9O77_RS10560 | 2206276..2206932 | + | 657 | WP_000812749.1 | protein-serine/threonine phosphatase | - |
| M9O77_RS10565 | 2206933..2207124 | - | 192 | WP_001296140.1 | YebW family protein | - |
| M9O77_RS10570 | 2207229..2207465 | - | 237 | WP_001295499.1 | YebV family protein | - |
| M9O77_RS10575 | 2207583..2209022 | - | 1440 | WP_024175799.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2164366..2222019 | 57653 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T246089 NZ_CP097716:2206038-2206141 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT246089 NZ_CP097716:c2206179-2205908 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
