Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 883044..883701 Replicon chromosome
Accession NZ_CP097697
Organism Klebsiella pneumoniae strain IR12183_1

Toxin (Protein)


Gene name cptA Uniprot ID W8UCT0
Locus tag M3X92_RS04470 Protein ID WP_002916310.1
Coordinates 883291..883701 (+) Length 137 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID W8UQ37
Locus tag M3X92_RS04465 Protein ID WP_002916312.1
Coordinates 883044..883310 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
M3X92_RS04440 (M3X92_04440) 878200..879633 - 1434 WP_002916322.1 6-phospho-beta-glucosidase BglA -
M3X92_RS04445 (M3X92_04445) 879752..880480 - 729 WP_002916321.1 MurR/RpiR family transcriptional regulator -
M3X92_RS04450 (M3X92_04450) 880530..880841 + 312 WP_002916319.1 N(4)-acetylcytidine aminohydrolase -
M3X92_RS04455 (M3X92_04455) 881005..881664 + 660 WP_002916317.1 hemolysin III family protein -
M3X92_RS04460 (M3X92_04460) 881815..882798 - 984 WP_002916313.1 tRNA-modifying protein YgfZ -
M3X92_RS04465 (M3X92_04465) 883044..883310 + 267 WP_002916312.1 FAD assembly factor SdhE Antitoxin
M3X92_RS04470 (M3X92_04470) 883291..883701 + 411 WP_002916310.1 protein YgfX Toxin
M3X92_RS04475 (M3X92_04475) 883708..884229 - 522 WP_002916308.1 flavodoxin FldB -
M3X92_RS04480 (M3X92_04480) 884330..885226 + 897 WP_004144729.1 site-specific tyrosine recombinase XerD -
M3X92_RS04485 (M3X92_04485) 885249..885962 + 714 WP_002916301.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
M3X92_RS04490 (M3X92_04490) 885968..887701 + 1734 WP_004151783.1 single-stranded-DNA-specific exonuclease RecJ -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(3-132)

Antitoxin

Flavinator of succinate dehydrogenase

(7-79)


Sequences

Toxin        


Download         Length: 137 a.a.        Molecular weight: 16049.85 Da        Isoelectric Point: 11.4778

>T246004 WP_002916310.1 NZ_CP097697:883291-883701 [Klebsiella pneumoniae]
VVLWQSDLRISWRAQWFSLLLHGVVAALVLLVPWPLSYTPIWLLLLSLVVFDCVRSQRRIHARRGEIKLLTDSRLRWQNA
EWEILGTPWVINSGMLLRLRHVDTRRGQHLWLAADSMDAGEWRDLRRLVLQKPAQE

Download         Length: 411 bp

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10480.98 Da        Isoelectric Point: 5.1116

>AT246004 WP_002916312.1 NZ_CP097697:883044-883310 [Klebsiella pneumoniae]
MDINNKARIHWACRRGMRELDISIMPFFEYEYDTLSDADKQLFIRLLENDDPDLFNWLMNHGKPADAELQRMVTLIQTRN
RERGPVAI

Download         Length: 267 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H3GSW7

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GY41

References