Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1994568..1994713 | Replicon | chromosome |
| Accession | NZ_CP097694 | ||
| Organism | Klebsiella pneumoniae strain IR12182_1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1994604..1994706 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1994568..1994713 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M3X85_RS09770 (M3X85_09770) | 1989698..1991758 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| M3X85_RS09775 (M3X85_09775) | 1991762..1992421 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| M3X85_RS09780 (M3X85_09780) | 1992500..1992730 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| M3X85_RS09785 (M3X85_09785) | 1992843..1993217 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| M3X85_RS09790 (M3X85_09790) | 1993221..1994090 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| M3X85_RS09795 (M3X85_09795) | 1994107..1994445 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1994568..1994713 | - | 146 | - | - | Antitoxin |
| - | 1994604..1994706 | + | 103 | - | - | Toxin |
| M3X85_RS09800 (M3X85_09800) | 1995081..1995224 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| M3X85_RS09805 (M3X85_09805) | 1995329..1996297 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| M3X85_RS09810 (M3X85_09810) | 1996454..1997107 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| M3X85_RS09815 (M3X85_09815) | 1997104..1997295 | - | 192 | WP_002911395.1 | YebW family protein | - |
| M3X85_RS09820 (M3X85_09820) | 1997393..1997632 | - | 240 | WP_002911393.1 | YebV family protein | - |
| M3X85_RS09825 (M3X85_09825) | 1997748..1999181 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T245981 NZ_CP097694:1994604-1994706 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT245981 NZ_CP097694:c1994713-1994568 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
