Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2068396..2068541 | Replicon | chromosome |
| Accession | NZ_CP097692 | ||
| Organism | Klebsiella pneumoniae strain IR12094_1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2068432..2068534 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2068396..2068541 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M3T51_RS10190 (M3T51_10190) | 2063526..2065586 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| M3T51_RS10195 (M3T51_10195) | 2065590..2066249 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| M3T51_RS10200 (M3T51_10200) | 2066328..2066558 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| M3T51_RS10205 (M3T51_10205) | 2066671..2067045 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| M3T51_RS10210 (M3T51_10210) | 2067049..2067918 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| M3T51_RS10215 (M3T51_10215) | 2067935..2068273 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2068396..2068541 | - | 146 | - | - | Antitoxin |
| - | 2068432..2068534 | + | 103 | - | - | Toxin |
| M3T51_RS10220 (M3T51_10220) | 2068909..2069052 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| M3T51_RS10225 (M3T51_10225) | 2069157..2070125 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| M3T51_RS10230 (M3T51_10230) | 2070282..2070935 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| M3T51_RS10235 (M3T51_10235) | 2070932..2071123 | - | 192 | WP_002911395.1 | YebW family protein | - |
| M3T51_RS10240 (M3T51_10240) | 2071221..2071460 | - | 240 | WP_002911393.1 | YebV family protein | - |
| M3T51_RS10245 (M3T51_10245) | 2071576..2073009 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T245960 NZ_CP097692:2068432-2068534 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT245960 NZ_CP097692:c2068541-2068396 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
