Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2107617..2107762 | Replicon | chromosome |
| Accession | NZ_CP097688 | ||
| Organism | Klebsiella pneumoniae strain IR12079_1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2107653..2107755 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2107617..2107762 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M3X89_RS10505 (M3X89_10505) | 2102747..2104807 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| M3X89_RS10510 (M3X89_10510) | 2104811..2105470 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| M3X89_RS10515 (M3X89_10515) | 2105549..2105779 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| M3X89_RS10520 (M3X89_10520) | 2105892..2106266 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| M3X89_RS10525 (M3X89_10525) | 2106270..2107139 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| M3X89_RS10530 (M3X89_10530) | 2107156..2107494 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2107617..2107762 | - | 146 | - | - | Antitoxin |
| - | 2107653..2107755 | + | 103 | - | - | Toxin |
| M3X89_RS10535 (M3X89_10535) | 2108130..2108273 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| M3X89_RS10540 (M3X89_10540) | 2108378..2109346 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| M3X89_RS10545 (M3X89_10545) | 2109503..2110156 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| M3X89_RS10550 (M3X89_10550) | 2110153..2110344 | - | 192 | WP_002911395.1 | YebW family protein | - |
| M3X89_RS10555 (M3X89_10555) | 2110442..2110681 | - | 240 | WP_002911393.1 | YebV family protein | - |
| M3X89_RS10560 (M3X89_10560) | 2110797..2112230 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T245935 NZ_CP097688:2107653-2107755 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT245935 NZ_CP097688:c2107762-2107617 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
