Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2090882..2091027 | Replicon | chromosome |
| Accession | NZ_CP097683 | ||
| Organism | Klebsiella pneumoniae strain IR12073_1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2090918..2091020 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2090882..2091027 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M3X91_RS10275 (M3X91_10275) | 2086012..2088072 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| M3X91_RS10280 (M3X91_10280) | 2088076..2088735 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| M3X91_RS10285 (M3X91_10285) | 2088814..2089044 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| M3X91_RS10290 (M3X91_10290) | 2089157..2089531 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| M3X91_RS10295 (M3X91_10295) | 2089535..2090404 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| M3X91_RS10300 (M3X91_10300) | 2090421..2090759 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2090882..2091027 | - | 146 | - | - | Antitoxin |
| - | 2090918..2091020 | + | 103 | - | - | Toxin |
| M3X91_RS10305 (M3X91_10305) | 2091395..2091538 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| M3X91_RS10310 (M3X91_10310) | 2091643..2092611 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| M3X91_RS10315 (M3X91_10315) | 2092768..2093421 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| M3X91_RS10320 (M3X91_10320) | 2093418..2093609 | - | 192 | WP_002911395.1 | YebW family protein | - |
| M3X91_RS10325 (M3X91_10325) | 2093707..2093946 | - | 240 | WP_002911393.1 | YebV family protein | - |
| M3X91_RS10330 (M3X91_10330) | 2094062..2095495 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T245912 NZ_CP097683:2090918-2091020 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT245912 NZ_CP097683:c2091027-2090882 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
