Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) hipBA/HipA-HipB
Location 2710620..2712208 Replicon chromosome
Accession NZ_CP097679
Organism Klebsiella pneumoniae strain IR12061_1

Toxin (Protein)


Gene name hipA Uniprot ID A0A0H3GN97
Locus tag M3X88_RS13410 Protein ID WP_004199851.1
Coordinates 2710620..2711942 (-) Length 441 a.a.

Antitoxin (Protein)


Gene name hipB Uniprot ID A0A0H3GXD8
Locus tag M3X88_RS13415 Protein ID WP_002904790.1
Coordinates 2711942..2712208 (-) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
M3X88_RS13395 (M3X88_13395) 2705685..2708186 + 2502 WP_004199853.1 fimbria/pilus outer membrane usher protein -
M3X88_RS13400 (M3X88_13400) 2708174..2709178 + 1005 WP_004199852.1 fimbrial protein -
M3X88_RS13405 (M3X88_13405) 2709311..2710603 + 1293 WP_002904794.1 glycoside hydrolase family 10 protein -
M3X88_RS13410 (M3X88_13410) 2710620..2711942 - 1323 WP_004199851.1 type II toxin-antitoxin system HipA family toxin Toxin
M3X88_RS13415 (M3X88_13415) 2711942..2712208 - 267 WP_002904790.1 type II toxin-antitoxin system antitoxin HipB Antitoxin
M3X88_RS13420 (M3X88_13420) 2712474..2712800 - 327 WP_002904788.1 hydroxyisourate hydrolase -
M3X88_RS13425 (M3X88_13425) 2712797..2713297 - 501 WP_002904787.1 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase -
M3X88_RS13430 (M3X88_13430) 2713275..2714654 - 1380 WP_004199850.1 nucleobase:cation symporter-2 family protein -
M3X88_RS13435 (M3X88_13435) 2715000..2716154 + 1155 WP_002904783.1 FAD-dependent urate hydroxylase HpxO -
M3X88_RS13440 (M3X88_13440) 2716135..2717058 - 924 WP_004199849.1 LysR family hpxDE operon transcriptional regulator HpxR -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HipA-like, C-terminal

(149-402)

Antitoxin

Cro/C1-type helix-turn-helix domain

(16-65)


Sequences

Toxin        


Download         Length: 441 a.a.        Molecular weight: 49128.44 Da        Isoelectric Point: 7.2487

>T245892 WP_004199851.1 NZ_CP097679:c2711942-2710620 [Klebsiella pneumoniae]
MATLTTWMNNVRVGTLTRQANGAHSFRYDEEWLRSPRARPLSLSLPLQYGNITADAVYHYFDNLLPDSPQVRDRIVRRYQ
ARSKQPFDLLAEVGRDSVGAVTLLPPGEEAHLEGLRWQTLDEAQLTALLTAYQSDIPLGMITSQDDFRISVAGAQEKTAL
LRMGEQWCIPQGATPTTHIIKLPIGEIKQPNATLDLRESVDNEYLCLALARELGLAVPEAEIITTPRIRALAVTRFDRRW
AQEGRVLLRLPQEDLCQAFGLPSAMKYESDGGPGIAAIMTFLLGSSEALKDRYDFMKFMVFQWLTGATDGHAKNFSIYLL
PGGSYRLTPFYDIISAFPVLGGTGLHLRDLKLSMGLNATKGRKTEINAIYPRHFLATAKAVNFPLEQMLAILQEFAGHVP
QAIESARRTLPADFSSHVWQAITENMLKLHARLQQGLQAL

Download         Length: 1323 bp

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 9906.27 Da        Isoelectric Point: 8.5912

>AT245892 WP_002904790.1 NZ_CP097679:c2712208-2711942 [Klebsiella pneumoniae]
MNSPQIYSPVQLANYLKLLRQQNHWTQDALARRIGIKQATLSNFENHPDKTTLTTLFKILQSLGVVMTLNAKAAETAPAP
DNNTDLDW

Download         Length: 267 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H3GN97

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GXD8

References