Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2029897..2030042 | Replicon | chromosome |
| Accession | NZ_CP097670 | ||
| Organism | Klebsiella pneumoniae strain IR5077_1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2029933..2030035 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2029897..2030042 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M3X94_RS09930 (M3X94_09930) | 2025027..2027087 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| M3X94_RS09935 (M3X94_09935) | 2027091..2027750 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| M3X94_RS09940 (M3X94_09940) | 2027829..2028059 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| M3X94_RS09945 (M3X94_09945) | 2028172..2028546 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| M3X94_RS09950 (M3X94_09950) | 2028550..2029419 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| M3X94_RS09955 (M3X94_09955) | 2029436..2029774 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2029897..2030042 | - | 146 | - | - | Antitoxin |
| - | 2029933..2030035 | + | 103 | - | - | Toxin |
| M3X94_RS09960 (M3X94_09960) | 2030410..2030553 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| M3X94_RS09965 (M3X94_09965) | 2030658..2031626 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| M3X94_RS09970 (M3X94_09970) | 2031783..2032436 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| M3X94_RS09975 (M3X94_09975) | 2032433..2032624 | - | 192 | WP_002911395.1 | YebW family protein | - |
| M3X94_RS09980 (M3X94_09980) | 2032722..2032961 | - | 240 | WP_002911393.1 | YebV family protein | - |
| M3X94_RS09985 (M3X94_09985) | 2033077..2034510 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T245842 NZ_CP097670:2029933-2030035 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT245842 NZ_CP097670:c2030042-2029897 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
