Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2011016..2011161 | Replicon | chromosome |
| Accession | NZ_CP097660 | ||
| Organism | Klebsiella pneumoniae strain IR12243_1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2011052..2011154 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2011016..2011161 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M3X86_RS09840 (M3X86_09840) | 2006148..2008207 | + | 2060 | Protein_1926 | oligopeptidase B | - |
| M3X86_RS09845 (M3X86_09845) | 2008211..2008869 | - | 659 | Protein_1927 | exodeoxyribonuclease X | - |
| M3X86_RS09850 (M3X86_09850) | 2008948..2009178 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| M3X86_RS09855 (M3X86_09855) | 2009291..2009665 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| M3X86_RS09860 (M3X86_09860) | 2009669..2010538 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| M3X86_RS09865 (M3X86_09865) | 2010555..2010893 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2011016..2011161 | - | 146 | - | - | Antitoxin |
| - | 2011052..2011154 | + | 103 | - | - | Toxin |
| M3X86_RS09870 (M3X86_09870) | 2011529..2011672 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| M3X86_RS09875 (M3X86_09875) | 2011777..2012745 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| M3X86_RS09880 (M3X86_09880) | 2012902..2013555 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| M3X86_RS09885 (M3X86_09885) | 2013552..2013743 | - | 192 | WP_002911395.1 | YebW family protein | - |
| M3X86_RS09890 (M3X86_09890) | 2013841..2014080 | - | 240 | WP_002911393.1 | YebV family protein | - |
| M3X86_RS09895 (M3X86_09895) | 2014196..2015629 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T245790 NZ_CP097660:2011052-2011154 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT245790 NZ_CP097660:c2011161-2011016 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
