Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1999102..1999247 | Replicon | chromosome |
| Accession | NZ_CP097658 | ||
| Organism | Klebsiella pneumoniae strain IR12099_1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1999138..1999240 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1999102..1999247 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M3X93_RS09785 (M3X93_09785) | 1994232..1996292 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| M3X93_RS09790 (M3X93_09790) | 1996296..1996955 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| M3X93_RS09795 (M3X93_09795) | 1997034..1997264 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| M3X93_RS09800 (M3X93_09800) | 1997377..1997751 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| M3X93_RS09805 (M3X93_09805) | 1997755..1998624 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| M3X93_RS09810 (M3X93_09810) | 1998641..1998979 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1999102..1999247 | - | 146 | - | - | Antitoxin |
| - | 1999138..1999240 | + | 103 | - | - | Toxin |
| M3X93_RS09815 (M3X93_09815) | 1999613..1999756 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| M3X93_RS09820 (M3X93_09820) | 1999861..2000829 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| M3X93_RS09825 (M3X93_09825) | 2000986..2001639 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| M3X93_RS09830 (M3X93_09830) | 2001636..2001827 | - | 192 | WP_002911395.1 | YebW family protein | - |
| M3X93_RS09835 (M3X93_09835) | 2001925..2002164 | - | 240 | WP_002911393.1 | YebV family protein | - |
| M3X93_RS09840 (M3X93_09840) | 2002280..2003713 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T245768 NZ_CP097658:1999138-1999240 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT245768 NZ_CP097658:c1999247-1999102 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
