Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4127096..4127241 | Replicon | chromosome |
| Accession | NZ_CP097654 | ||
| Organism | Klebsiella pneumoniae strain IR1272_1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4127132..4127234 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4127096..4127241 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M3T50_RS20050 (M3T50_20050) | 4122226..4124286 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| M3T50_RS20055 (M3T50_20055) | 4124290..4124949 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| M3T50_RS20060 (M3T50_20060) | 4125028..4125258 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| M3T50_RS20065 (M3T50_20065) | 4125371..4125745 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| M3T50_RS20070 (M3T50_20070) | 4125749..4126618 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| M3T50_RS20075 (M3T50_20075) | 4126635..4126973 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4127096..4127241 | - | 146 | - | - | Antitoxin |
| - | 4127132..4127234 | + | 103 | - | - | Toxin |
| M3T50_RS20080 (M3T50_20080) | 4127609..4127752 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| M3T50_RS20085 (M3T50_20085) | 4127857..4128825 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| M3T50_RS20090 (M3T50_20090) | 4128982..4129635 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| M3T50_RS20095 (M3T50_20095) | 4129632..4129823 | - | 192 | WP_002911395.1 | YebW family protein | - |
| M3T50_RS20100 (M3T50_20100) | 4129921..4130160 | - | 240 | WP_002911393.1 | YebV family protein | - |
| M3T50_RS20105 (M3T50_20105) | 4130276..4131709 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T245752 NZ_CP097654:4127132-4127234 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT245752 NZ_CP097654:c4127241-4127096 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
