Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1810077..1810224 | Replicon | chromosome |
| Accession | NZ_CP097646 | ||
| Organism | Klebsiella quasipneumoniae strain NE1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1810118..1810220 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1810077..1810224 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M8232_RS08685 | 1805212..1807272 | + | 2061 | WP_250202711.1 | oligopeptidase B | - |
| M8232_RS08690 | 1807276..1807935 | - | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| M8232_RS08695 | 1808014..1808244 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| M8232_RS08700 | 1808357..1808731 | + | 375 | WP_064149717.1 | CopC domain-containing protein YobA | - |
| M8232_RS08705 | 1808735..1809604 | + | 870 | WP_250202712.1 | copper homeostasis membrane protein CopD | - |
| M8232_RS08710 | 1809621..1809959 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1810077..1810224 | - | 148 | - | - | Antitoxin |
| - | 1810118..1810220 | + | 103 | - | - | Toxin |
| M8232_RS08715 | 1810608..1810751 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| M8232_RS08720 | 1810855..1811823 | - | 969 | WP_122543197.1 | VirK/YbjX family protein | - |
| M8232_RS08725 | 1811980..1812633 | + | 654 | WP_032456309.1 | protein-serine/threonine phosphatase | - |
| M8232_RS08730 | 1812630..1812821 | - | 192 | WP_002911395.1 | YebW family protein | - |
| M8232_RS08735 | 1812919..1813158 | - | 240 | WP_002911393.1 | YebV family protein | - |
| M8232_RS08740 | 1813275..1814708 | - | 1434 | WP_053810194.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T245711 NZ_CP097646:1810118-1810220 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT245711 NZ_CP097646:c1810224-1810077 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
