Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2021201..2021346 | Replicon | chromosome |
| Accession | NZ_CP097626 | ||
| Organism | Klebsiella pneumoniae strain 140253 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2021237..2021339 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2021201..2021346 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M9P58_RS09875 (M9P58_09875) | 2016331..2018391 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| M9P58_RS09880 (M9P58_09880) | 2018395..2019054 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| M9P58_RS09885 (M9P58_09885) | 2019133..2019363 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| M9P58_RS09890 (M9P58_09890) | 2019476..2019850 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| M9P58_RS09895 (M9P58_09895) | 2019854..2020723 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| M9P58_RS09900 (M9P58_09900) | 2020740..2021078 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2021201..2021346 | - | 146 | - | - | Antitoxin |
| - | 2021237..2021339 | + | 103 | - | - | Toxin |
| M9P58_RS09905 (M9P58_09905) | 2021714..2021857 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| M9P58_RS09910 (M9P58_09910) | 2021962..2022930 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| M9P58_RS09915 (M9P58_09915) | 2023087..2023740 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| M9P58_RS09920 (M9P58_09920) | 2023737..2023928 | - | 192 | WP_002911395.1 | YebW family protein | - |
| M9P58_RS09925 (M9P58_09925) | 2024026..2024265 | - | 240 | WP_002911393.1 | YebV family protein | - |
| M9P58_RS09930 (M9P58_09930) | 2024381..2025814 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T245678 NZ_CP097626:2021237-2021339 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT245678 NZ_CP097626:c2021346-2021201 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
