Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/RHH(antitoxin) |
Location | 32331..32881 | Replicon | plasmid pPAC1.3a |
Accession | NZ_CP097558 | ||
Organism | Pseudomonas aeruginosa strain C1.3 |
Toxin (Protein)
Gene name | relE | Uniprot ID | - |
Locus tag | PAC13_RS34075 | Protein ID | WP_034061810.1 |
Coordinates | 32603..32881 (+) | Length | 93 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | - |
Locus tag | PAC13_RS34070 | Protein ID | WP_034061812.1 |
Coordinates | 32331..32603 (+) | Length | 91 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
PAC13_RS34040 (PAC13_33970) | 27642..28307 | + | 666 | WP_034061819.1 | hypothetical protein | - |
PAC13_RS34045 (PAC13_33975) | 28445..28711 | + | 267 | WP_034061816.1 | helix-turn-helix transcriptional regulator | - |
PAC13_RS34050 (PAC13_33980) | 28677..29489 | + | 813 | Protein_41 | site-specific integrase | - |
PAC13_RS34055 (PAC13_33985) | 29651..30799 | + | 1149 | WP_034061814.1 | site-specific integrase | - |
PAC13_RS34060 (PAC13_33990) | 30941..31687 | + | 747 | WP_034061813.1 | DUF2807 domain-containing protein | - |
PAC13_RS34065 (PAC13_33995) | 31697..32137 | + | 441 | WP_128734628.1 | hypothetical protein | - |
PAC13_RS34070 (PAC13_34000) | 32331..32603 | + | 273 | WP_034061812.1 | ribbon-helix-helix domain-containing protein | Antitoxin |
PAC13_RS34075 (PAC13_34005) | 32603..32881 | + | 279 | WP_034061810.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
PAC13_RS34080 (PAC13_34010) | 32883..33710 | + | 828 | WP_034061809.1 | hypothetical protein | - |
PAC13_RS34085 (PAC13_34015) | 33724..33966 | + | 243 | WP_034061808.1 | hypothetical protein | - |
PAC13_RS34090 (PAC13_34020) | 33979..34491 | - | 513 | WP_044305333.1 | hypothetical protein | - |
PAC13_RS34095 (PAC13_34025) | 34488..36338 | - | 1851 | WP_049267175.1 | tyrosine-type recombinase/integrase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Non-Mobilizable plasmid | - | - | 1..177192 | 177192 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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