Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) /BrnT(toxin)
Location 4410548..4411028 Replicon chromosome
Accession NZ_CP097480
Organism Chroococcidiopsis sp. CCNUC1

Toxin (Protein)


Gene name - Uniprot ID -
Locus tag M5J74_RS20240 Protein ID WP_250012977.1
Coordinates 4410765..4411028 (-) Length 88 a.a.

Antitoxin (Protein)


Gene name - Uniprot ID -
Locus tag M5J74_RS20235 Protein ID WP_250012976.1
Coordinates 4410548..4410778 (-) Length 77 a.a.

Genomic Context

M5J74_RS20215M5J74_RS20220M5J74_RS20245M5J74_RS20250M5J74_RS20265M5J74_RS20270M5J74_RS20275M5J74_RS20225M5J74_RS20230M5J74_RS20235M5J74_RS20240M5J74_RS20255M5J74_RS20260M5J74_RS32860
Location: 4405660..4405878 (219 bp)
Type: Others
Protein ID: WP_250012973.1
Location: 4405882..4406166 (285 bp)
Type: Others
Protein ID: WP_015155588.1
Location: 4411352..4411606 (255 bp)
Type: Others
Protein ID: WP_250012978.1
Location: 4411599..4412021 (423 bp)
Type: Others
Protein ID: WP_250012979.1
Location: 4413367..4413951 (585 bp)
Type: Others
Protein ID: WP_250012982.1
Location: 4414357..4414866 (510 bp)
Type: Others
Protein ID: WP_250012983.1
Location: 4415149..4415892 (744 bp)
Type: Others
Protein ID: WP_250012984.1
Location: 4406160..4409384 (3225 bp)
Type: Others
Protein ID: WP_250012974.1
Location: 4409473..4409715 (243 bp)
Type: Others
Protein ID: WP_250012975.1
Location: 4410548..4410778 (231 bp)
Type: Antitoxin
Protein ID: WP_250012976.1
Location: 4410765..4411028 (264 bp)
Type: Toxin
Protein ID: WP_250012977.1
Location: 4412085..4412258 (174 bp)
Type: Others
Protein ID: WP_250012980.1
Location: 4412242..4412970 (729 bp)
Type: Others
Protein ID: WP_250012981.1
Location: 4414978..4415100 (123 bp)
Type: Others
Protein ID: WP_256498546.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
M5J74_RS20215 (M5J74_20215)4405660..4405878+219WP_250012973.1hypothetical protein-
M5J74_RS20220 (M5J74_20220)4405882..4406166+285WP_015155588.1type II toxin-antitoxin system YafQ family toxin-
M5J74_RS20225 (M5J74_20225)4406160..4409384-3225WP_250012974.1N-6 DNA methylase-
M5J74_RS20230 (M5J74_20230)4409473..4409715-243WP_250012975.1helix-turn-helix transcriptional regulator-
M5J74_RS20235 (M5J74_20235)4410548..4410778-231WP_250012976.1BrnA antitoxin family proteinAntitoxin
M5J74_RS20240 (M5J74_20240)4410765..4411028-264WP_250012977.1BrnT family toxinToxin
M5J74_RS20245 (M5J74_20245)4411352..4411606+255WP_250012978.1YlcI/YnfO family protein-
M5J74_RS20250 (M5J74_20250)4411599..4412021+423WP_250012979.1type II toxin-antitoxin system VapC family toxin-
M5J74_RS20255 (M5J74_20255)4412085..4412258-174WP_250012980.1hypothetical protein-
M5J74_RS20260 (M5J74_20260)4412242..4412970-729WP_250012981.1AAA family ATPase-
M5J74_RS20265 (M5J74_20265)4413367..4413951+585WP_250012982.1alpha/beta hydrolase-
M5J74_RS20270 (M5J74_20270)4414357..4414866+510WP_250012983.1DUF411 domain-containing protein-
M5J74_RS328604414978..4415100-123WP_256498546.1hypothetical protein-
M5J74_RS20275 (M5J74_20275)4415149..4415892+744WP_250012984.1aldo/keto reductase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Ribonuclease toxin, BrnT, of type II toxin-antitoxin system

(5-80)

Antitoxin

CopG antitoxin

(7-68)


Sequences

Toxin        


Download         Length: 88 a.a.        Molecular weight: 10427.72 Da        Isoelectric Point: 5.2435

>T245502 WP_250012977.1 NZ_CP097480:c4411028-4410765 [Chroococcidiopsis sp. CCNUC1]
MEFEFDETKSQSNREKHGIDFVEAQELWEDSQRLEIPARTEDEPRYLVIGKIGDKHWSAVITYRNVKIRIISVRRARQEE
MAIYESK

Download         Length: 264 bp

Antitoxin


Download         Length: 77 a.a.        Molecular weight: 8921.23 Da        Isoelectric Point: 8.0135

>AT245502 WP_250012976.1 NZ_CP097480:c4410778-4410548 [Chroococcidiopsis sp. CCNUC1]
MKASEFDQKFDKGEDISEFLDLAAARRPGYEQKRVNVDFPAWMIEALDREAKRLGVTRQSIVKVWIAERLEKCPHR

Download         Length: 231 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References