Detailed information of TA system TA024536

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/PIN(toxin)
• Location: 3878313..3878932
• Replicon: chromosome
• Accession: NC_013757
• Organism: Geodermatophilus obscurus DSM 43160

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: D2SCF5
• Locus tag: GOBS_RS18055
• Protein ID: WP_012949708.1
• Coordinates: 3878540..3878932 (+)
• Length: 131 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: -
• Locus tag: GOBS_RS18050
• Protein ID: WP_041241566.1
• Coordinates: 3878313..3878543 (+)
• Length: 77 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Pae0151-like, PIN domain (3-116)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 131 a.a.
• Molecular weight: 13631.56 Da
• Isoelectric Point: 5.4729

>T24536 WP_012949708.1 NC_013757:3878540-3878932 [Geodermatophilus obscurus DSM 43160]
VIVVDASTVVAALLAAGQGGDDAREVMLGDDAHAPHLLDVEVLSAVRRHALSDRLGDTAARDAVTAMRDLPVIRHGHDLL
LDRALQLRDSITAYDGVYVALAEILGATLVTGDRRLSHAPGLRCPVSVVG

Nucleotide

• Length: 393 bp

>T24536 NC_013757:3878540-3878932 [Geodermatophilus obscurus DSM 43160]
GTGATCGTCGTCGATGCCTCGACGGTCGTCGCGGCTCTGCTCGCCGCCGGCCAGGGAGGGGACGACGCCCGCGAGGTGAT
GCTCGGCGACGACGCCCATGCCCCCCACCTGCTCGATGTGGAGGTGCTCTCGGCTGTCCGCCGACACGCATTGAGCGACC
GGCTCGGCGACACGGCTGCCCGGGACGCGGTCACCGCCATGCGCGACCTGCCCGTCATCCGGCACGGCCACGACCTGCTC
CTCGACCGGGCGCTGCAACTGCGCGACTCGATCACCGCCTACGACGGGGTCTACGTCGCGCTGGCCGAGATCCTCGGGGC
CACCCTCGTCACCGGTGACCGCCGGCTGTCCCACGCACCGGGCCTGCGGTGCCCGGTCTCGGTCGTCGGCTGA

Antitoxin

Protein

• Length: 77 a.a.
• Molecular weight: 8678.01 Da
• Isoelectric Point: 8.7707

>AT24536 WP_041241566.1 NC_013757:3878313-3878543 [Geodermatophilus obscurus DSM 43160]
VSKMLQVRNVPDDLHAELRRRAAEAGMSLSDYVLRELRRVAERSPMAEVFARSAAMRIPLPMDEVVEGIRAERDSR

Nucleotide

• Length: 231 bp

>AT24536 NC_013757:3878313-3878543 [Geodermatophilus obscurus DSM 43160]
GTGAGCAAGATGCTGCAGGTCCGGAACGTGCCGGACGATCTGCACGCCGAACTCCGGCGTCGCGCGGCCGAGGCGGGGAT
GTCCCTGTCCGACTACGTGCTCCGCGAGCTGCGGCGTGTCGCCGAGCGCTCACCGATGGCCGAGGTCTTCGCCCGGTCGG
CGGCGATGCGGATCCCGCTGCCCATGGACGAGGTGGTCGAGGGGATCCGGGCCGAGCGCGACAGCCGGTGA

Structures

Toxin

• AlphaFold DB: D2SCF5