Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 966203..966857 Replicon chromosome
Accession NZ_CP097367
Organism Escherichia coli strain AGR6128

Toxin (Protein)


Gene name cptA Uniprot ID F4T2L4
Locus tag M7747_RS04765 Protein ID WP_000244765.1
Coordinates 966450..966857 (+) Length 136 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID F4T2L5
Locus tag M7747_RS04760 Protein ID WP_000354050.1
Coordinates 966203..966469 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
M7747_RS04740 (962291) 962291..963724 - 1434 WP_001296350.1 6-phospho-beta-glucosidase BglA -
M7747_RS04745 (963769) 963769..964080 + 312 WP_001182956.1 N(4)-acetylcytidine aminohydrolase -
M7747_RS04750 (964244) 964244..964903 + 660 WP_000250275.1 hemolysin III family protein -
M7747_RS04755 (964980) 964980..965960 - 981 WP_000886080.1 tRNA-modifying protein YgfZ -
M7747_RS04760 (966203) 966203..966469 + 267 WP_000354050.1 FAD assembly factor SdhE Antitoxin
M7747_RS04765 (966450) 966450..966857 + 408 WP_000244765.1 protein YgfX Toxin
M7747_RS04770 (966897) 966897..967418 - 522 WP_001055874.1 flavodoxin FldB -
M7747_RS04775 (967530) 967530..968426 + 897 WP_000806638.1 site-specific tyrosine recombinase XerD -
M7747_RS04780 (968451) 968451..969161 + 711 WP_000715230.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
M7747_RS04785 (969167) 969167..970900 + 1734 WP_000813195.1 single-stranded-DNA-specific exonuclease RecJ -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(3-131)

Antitoxin

Flavinator of succinate dehydrogenase

(7-79)


Sequences

Toxin        


Download         Length: 136 a.a.        Molecular weight: 16043.95 Da        Isoelectric Point: 11.5202

>T245292 WP_000244765.1 NZ_CP097367:966450-966857 [Escherichia coli]
VVLWQSDLRVSWRAQWLSLLIHGLVAAVILLIPWPLSYTPLWMVLLSLVVFDCVRSQRRINARQGEIRLLMDGRLRWQGQ
EWSIVKAPWMIKSGMMLRLRSDSGKRQHLWLAADSMDEAEWRDLRRILLQQETQR

Download         Length: 408 bp

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10535.07 Da        Isoelectric Point: 5.1599

>AT245292 WP_000354050.1 NZ_CP097367:966203-966469 [Escherichia coli]
MDINNKARIHWACRRGMRELDISIMPFFEHEYDSLSDDEKRTFIRLLECDDPDLFNWLMNHGKPADAELEMMVRLIQTRN
RERGPVAI

Download         Length: 267 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A454A7D7

Antitoxin

Source ID Structure
AlphaFold DB A0A061L3F4

References