Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2251699..2251967 | Replicon | chromosome |
| Accession | NZ_CP097360 | ||
| Organism | Escherichia coli strain AGR4587 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2251827..2251929 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2251699..2251967 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M7749_RS10745 | 2248252..2248914 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| M7749_RS10750 | 2248938..2249594 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| M7749_RS10755 | 2249696..2249926 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| M7749_RS10760 | 2250065..2250439 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| M7749_RS10765 | 2250443..2251315 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| M7749_RS10770 | 2251328..2251669 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2251699..2251967 | - | 269 | - | - | Antitoxin |
| - | 2251827..2251929 | + | 103 | - | - | Toxin |
| M7749_RS10775 | 2252064..2252720 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| M7749_RS10780 | 2252721..2252912 | - | 192 | WP_001296140.1 | YebW family protein | - |
| M7749_RS10785 | 2253017..2253253 | - | 237 | WP_001295499.1 | YebV family protein | - |
| M7749_RS10790 | 2253370..2254809 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T245273 NZ_CP097360:2251827-2251929 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT245273 NZ_CP097360:c2251967-2251699 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
