Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2837099..2837308 | Replicon | chromosome |
| Accession | NZ_CP097342 | ||
| Organism | Enterobacter hormaechei subsp. xiangfangensis strain va18651 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2837112..2837215 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2837099..2837308 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5K26_RS13675 (M5K26_13655) | 2833367..2834815 | + | 1449 | WP_195207010.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| M5K26_RS13680 (M5K26_13660) | 2834922..2835161 | + | 240 | WP_003859885.1 | YebV family protein | - |
| M5K26_RS13685 (M5K26_13665) | 2835196..2835840 | - | 645 | WP_017384338.1 | protein-serine/threonine phosphatase | - |
| M5K26_RS13690 (M5K26_13670) | 2836008..2836988 | + | 981 | WP_045911188.1 | VirK/YbjX family protein | - |
| M5K26_RS13695 (M5K26_13675) | 2837034..2837231 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2837099..2837308 | + | 210 | - | - | Antitoxin |
| - | 2837112..2837215 | - | 104 | - | - | Toxin |
| M5K26_RS13700 (M5K26_13680) | 2837357..2837695 | - | 339 | WP_045911187.1 | YebY family protein | - |
| M5K26_RS13705 (M5K26_13685) | 2837712..2838581 | - | 870 | WP_045911186.1 | copper homeostasis membrane protein CopD | - |
| M5K26_RS13710 (M5K26_13690) | 2838583..2838954 | - | 372 | WP_045911185.1 | CopC domain-containing protein YobA | - |
| M5K26_RS13715 (M5K26_13695) | 2839092..2839322 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| M5K26_RS13720 (M5K26_13700) | 2839434..2840084 | + | 651 | WP_015570289.1 | carbon-nitrogen hydrolase family protein | - |
| M5K26_RS13725 (M5K26_13705) | 2840109..2840771 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T245242 NZ_CP097342:c2837215-2837112 [Enterobacter hormaechei subsp. xiangfangensis]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT245242 NZ_CP097342:2837099-2837308 [Enterobacter hormaechei subsp. xiangfangensis]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCATAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCATAACATCACTAAATGTGAAAAACCGC
