Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2106094..2106234 | Replicon | chromosome |
| Accession | NZ_CP097324 | ||
| Organism | Citrobacter sp. XT1-2-2 strain XT1_2_2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2106129..2106232 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2106094..2106234 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M4I31_RS09945 | 2102542..2103204 | - | 663 | WP_038641401.1 | exodeoxyribonuclease X | - |
| M4I31_RS09950 | 2103227..2103883 | - | 657 | WP_085048048.1 | carbon-nitrogen hydrolase family protein | - |
| M4I31_RS09955 | 2103990..2104220 | - | 231 | WP_038641397.1 | DNA polymerase III subunit theta | - |
| M4I31_RS09960 | 2104364..2104738 | + | 375 | WP_038641395.1 | CopC domain-containing protein YobA | - |
| M4I31_RS09965 | 2104742..2105614 | + | 873 | WP_069324700.1 | copper homeostasis membrane protein CopD | - |
| M4I31_RS09970 | 2105635..2105973 | + | 339 | WP_038641391.1 | YebY family protein | - |
| - | 2106094..2106234 | - | 141 | - | - | Antitoxin |
| - | 2106129..2106232 | + | 104 | - | - | Toxin |
| M4I31_RS09975 | 2106555..2107835 | + | 1281 | WP_085048049.1 | hypothetical protein | - |
| M4I31_RS09980 | 2107909..2108550 | + | 642 | WP_085048050.1 | protein-serine/threonine phosphatase | - |
| M4I31_RS09985 | 2108551..2108742 | - | 192 | WP_032939629.1 | YebW family protein | - |
| M4I31_RS09990 | 2108865..2109101 | - | 237 | WP_029139506.1 | YebV family protein | - |
| M4I31_RS09995 | 2109202..2110623 | - | 1422 | WP_085048051.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T245143 NZ_CP097324:2106129-2106232 [Citrobacter sp. XT1-2-2]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 141 bp
>AT245143 NZ_CP097324:c2106234-2106094 [Citrobacter sp. XT1-2-2]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
