Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/ParE-YafN |
Location | 1806832..1807360 | Replicon | chromosome |
Accession | NZ_CP097294 | ||
Organism | Vibrio sp. J383 |
Toxin (Protein)
Gene name | relE | Uniprot ID | K5TRR0 |
Locus tag | M4S28_RS24380 | Protein ID | WP_005377002.1 |
Coordinates | 1807070..1807360 (+) | Length | 97 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | K5UYY9 |
Locus tag | M4S28_RS24375 | Protein ID | WP_004730320.1 |
Coordinates | 1806832..1807080 (+) | Length | 83 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
M4S28_RS24345 (M4S28_24345) | 1802622..1803521 | - | 900 | WP_249633101.1 | LysR substrate-binding domain-containing protein | - |
M4S28_RS24350 (M4S28_24350) | 1803661..1804509 | + | 849 | WP_249633102.1 | DMT family transporter | - |
M4S28_RS24355 (M4S28_24355) | 1804750..1805214 | - | 465 | WP_249633103.1 | Sbal_3080 family lipoprotein | - |
M4S28_RS24360 (M4S28_24360) | 1805411..1805809 | + | 399 | WP_249633104.1 | hypothetical protein | - |
M4S28_RS24365 (M4S28_24365) | 1805867..1806637 | - | 771 | WP_249633105.1 | chromosome partitioning protein ParA | - |
M4S28_RS24370 (M4S28_24370) | 1806689..1806757 | - | 69 | WP_077672877.1 | DUF3265 domain-containing protein | - |
M4S28_RS24375 (M4S28_24375) | 1806832..1807080 | + | 249 | WP_004730320.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
M4S28_RS24380 (M4S28_24380) | 1807070..1807360 | + | 291 | WP_005377002.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
M4S28_RS24385 (M4S28_24385) | 1807379..1807780 | - | 402 | WP_061025733.1 | hypothetical protein | - |
M4S28_RS24390 (M4S28_24390) | 1807800..1807928 | - | 129 | WP_249633769.1 | DUF3265 domain-containing protein | - |
M4S28_RS24400 (M4S28_24400) | 1809642..1810103 | - | 462 | WP_249633107.1 | hypothetical protein | - |
M4S28_RS24405 (M4S28_24405) | 1810118..1810393 | - | 276 | WP_249633108.1 | hypothetical protein | - |
M4S28_RS24410 (M4S28_24410) | 1810538..1810897 | - | 360 | WP_249633109.1 | Ypar14, super integron cassette | - |
M4S28_RS24415 (M4S28_24415) | 1811183..1812274 | - | 1092 | WP_249633110.1 | transposase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Prophage | - | - | 1790870..1817261 | 26391 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A347UR03 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0L1LA33 |