Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelB(antitoxin)
Location 5403669..5404173 Replicon chromosome
Accession NZ_CP097286
Organism Pseudomonas viridiflava strain JACO-C-5

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag M4X66_RS23855 Protein ID WP_249583190.1
Coordinates 5403669..5403887 (-) Length 73 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag M4X66_RS23860 Protein ID WP_043303383.1
Coordinates 5403874..5404173 (-) Length 100 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
M4X66_RS23840 5398918..5400300 - 1383 WP_057410610.1 NorM family multidrug efflux MATE transporter -
M4X66_RS23845 5400457..5401377 + 921 WP_004887422.1 LysR substrate-binding domain-containing protein -
M4X66_RS23850 5401559..5403535 + 1977 WP_122422910.1 methyl-accepting chemotaxis protein -
M4X66_RS23855 5403669..5403887 - 219 WP_249583190.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
M4X66_RS23860 5403874..5404173 - 300 WP_043303383.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
M4X66_RS23865 5404252..5405745 - 1494 WP_249583191.1 YifB family Mg chelatase-like AAA ATPase -
M4X66_RS23870 5405932..5406450 - 519 WP_249583192.1 Bro-N domain-containing protein -
M4X66_RS23875 5407457..5408650 + 1194 WP_249583193.1 benzoate/H(+) symporter BenE family transporter -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-72)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(5-51)


Sequences

Toxin        


Download         Length: 73 a.a.        Molecular weight: 8344.47 Da        Isoelectric Point: 5.0053

>T245099 WP_249583190.1 NZ_CP097286:c5403887-5403669 [Pseudomonas viridiflava]
VTTVEWSSWARQDLLAIIDYISDDNVTAAQEMKDTIESRVANLPLHPRLYKEGREPGTREMVVHPNYIVIYK

Download         Length: 219 bp

Antitoxin


Download         Length: 100 a.a.        Molecular weight: 11192.69 Da        Isoelectric Point: 6.2266

>AT245099 WP_043303383.1 NZ_CP097286:c5404173-5403874 [Pseudomonas viridiflava]
MATHTSMLHVRIDNDLKTQATETLAKFGLTVSDAVRILLTRVAREGALPVGFTSDAEAYDKWFRAKVKEAMDDTQPSITH
EQMMAEAQQLIDRKRRDDS

Download         Length: 300 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References