Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | omega-epsilon-zeta/- |
Location | 2654389..2655761 | Replicon | chromosome |
Accession | NZ_CP097269 | ||
Organism | Acidovorax sp. GBBC 1281 |
Toxin (Protein)
Gene name | avrRxo1 | Uniprot ID | - |
Locus tag | M5C96_RS12310 | Protein ID | WP_272569373.1 |
Coordinates | 2654389..2655468 (+) | Length | 360 a.a. |
Antitoxin (Protein)
Gene name | arc1 | Uniprot ID | - |
Locus tag | M5C96_RS12315 | Protein ID | WP_272569374.1 |
Coordinates | 2655465..2655761 (+) | Length | 99 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
M5C96_RS12285 (M5C96_12290) | 2649716..2650528 | + | 813 | WP_272569368.1 | NAD-dependent deacylase | - |
M5C96_RS12290 (M5C96_12295) | 2650937..2651611 | + | 675 | WP_272569697.1 | 3,4-dihydroxy-2-butanone-4-phosphate synthase | - |
M5C96_RS12295 (M5C96_12300) | 2651628..2652587 | - | 960 | WP_272569369.1 | aldo/keto reductase | - |
M5C96_RS12300 (M5C96_12305) | 2652756..2653412 | - | 657 | WP_272569370.1 | chromate transporter | - |
M5C96_RS12305 (M5C96_12310) | 2653409..2654017 | - | 609 | WP_272569371.1 | chromate transporter | - |
M5C96_RS12310 (M5C96_12315) | 2654389..2655468 | + | 1080 | WP_272569373.1 | XopAJ/AvrRxo1 family type III secretion system effector zeta toxin | Toxin |
M5C96_RS12315 (M5C96_12320) | 2655465..2655761 | + | 297 | WP_272569374.1 | hypothetical protein | Antitoxin |
M5C96_RS12320 (M5C96_12325) | 2655825..2656670 | + | 846 | WP_272569375.1 | fumarylacetoacetate hydrolase family protein | - |
M5C96_RS12325 (M5C96_12330) | 2656704..2658677 | - | 1974 | WP_272569376.1 | TonB-dependent receptor | - |
M5C96_RS12330 (M5C96_12335) | 2658800..2659501 | - | 702 | WP_272569377.1 | superoxide dismutase family protein | - |
M5C96_RS12335 (M5C96_12340) | 2659788..2660363 | + | 576 | WP_272569378.1 | retropepsin-like aspartic protease | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 360 a.a. Molecular weight: 38366.44 Da Isoelectric Point: 7.1496
>T245097 WP_272569373.1 NZ_CP097269:2654389-2655468 [Acidovorax sp. GBBC 1281]
VRSAISALRSLPAWRTSHSAAFNGAYANGSVEMFTVGTLPPVGPGRWAYLADPAHWQPKRRKLHDALIDDSLRKATVFAE
CVERLGCDPTLFALRGNTAAGKTRLARSAVPALADALQESGGGSINPDAFKSRLRKAPGQPRLTPANVHAESCVLADRLE
RQIATGKTASGKPASMLVDKRLGGAHEVASYIALSENTGRQVEMYDIDMPLERSLLGVLQRDPDGDDPRPPYAAVVAGYS
AIRGNRLDVIDQFLAKPQIGTYHLMGTSATGEKAPVATVASGELTIHDADQYAEILALSDLPASDIGEQVIDDETIRQLT
QAMPAAIAVTAREALQKYAGLSWSQALGIHCTLNGQDRR
VRSAISALRSLPAWRTSHSAAFNGAYANGSVEMFTVGTLPPVGPGRWAYLADPAHWQPKRRKLHDALIDDSLRKATVFAE
CVERLGCDPTLFALRGNTAAGKTRLARSAVPALADALQESGGGSINPDAFKSRLRKAPGQPRLTPANVHAESCVLADRLE
RQIATGKTASGKPASMLVDKRLGGAHEVASYIALSENTGRQVEMYDIDMPLERSLLGVLQRDPDGDDPRPPYAAVVAGYS
AIRGNRLDVIDQFLAKPQIGTYHLMGTSATGEKAPVATVASGELTIHDADQYAEILALSDLPASDIGEQVIDDETIRQLT
QAMPAAIAVTAREALQKYAGLSWSQALGIHCTLNGQDRR
Download Length: 1080 bp
Antitoxin
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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