Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2693374..2693519 Replicon chromosome
Accession NZ_CP097262
Organism Salmonella enterica subsp. enterica strain B3-6

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2693376..2693479 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2693374..2693519 (+)

Genomic Context

M3N94_RS13240M3N94_RS13245--M3N94_RS13265M3N94_RS13270M3N94_RS13275M3N94_RS13225M3N94_RS13230M3N94_RS13235--M3N94_RS13250M3N94_RS13255M3N94_RS13260
Location: 2691904..2692182 (279 bp)
Type: Others
Protein ID: WP_001575998.1
Location: 2692157..2693236 (1080 bp)
Type: Others
Protein ID: WP_000087636.1
Location: 2693374..2693519 (146 bp)
Type: Antitoxin
Protein ID: -
Location: 2695377..2695607 (231 bp)
Type: Others
Protein ID: WP_000856224.1
Location: 2695715..2696371 (657 bp)
Type: Others
Protein ID: WP_000100257.1
Location: 2696395..2697093 (699 bp)
Type: Others
Protein ID: WP_000944288.1
Location: 2688574..2688792 (219 bp)
Type: Others
Protein ID: WP_001524708.1
Location: 2689094..2689192 (99 bp)
Type: Others
Protein ID: WP_223151200.1
Location: 2689511..2691490 (1980 bp)
Type: Others
Protein ID: WP_001237395.1
Location: 2693376..2693479 (104 bp)
Type: Toxin
Protein ID: -
Location: 2693619..2693972 (354 bp)
Type: Others
Protein ID: WP_000722370.1
Location: 2693989..2694864 (876 bp)
Type: Others
Protein ID: WP_000979694.1
Location: 2694865..2695239 (375 bp)
Type: Others
Protein ID: WP_000168393.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
M3N94_RS132252688574..2688792-219WP_001524708.1hypothetical protein-
M3N94_RS132302689094..2689192-99WP_223151200.1hypothetical protein-
M3N94_RS132352689511..2691490-1980WP_001237395.1alkyl sulfatase dimerization domain-containing protein-
M3N94_RS132402691904..2692182+279WP_001575998.1excisionase-
M3N94_RS132452692157..2693236+1080WP_000087636.1phage integrase Arm DNA-binding domain-containing protein-
-2693374..2693519+146--Antitoxin
-2693376..2693479-104--Toxin
M3N94_RS132502693619..2693972-354WP_000722370.1YebY family protein-
M3N94_RS132552693989..2694864-876WP_000979694.1copper homeostasis membrane protein CopD-
M3N94_RS132602694865..2695239-375WP_000168393.1CopC domain-containing protein YobA-
M3N94_RS132652695377..2695607+231WP_000856224.1DNA polymerase III subunit theta-
M3N94_RS132702695715..2696371+657WP_000100257.1carbon-nitrogen hydrolase family protein-
M3N94_RS132752696395..2697093+699WP_000944288.1exodeoxyribonuclease X-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-insideProphage-sopE2 / sopE2 / sodCI2652401..271538962988


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T245078 NZ_CP097262:c2693479-2693376 [Salmonella enterica subsp. enterica]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 146 bp

>AT245078 NZ_CP097262:2693374-2693519 [Salmonella enterica subsp. enterica]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References