Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2721002..2721144 | Replicon | chromosome |
| Accession | NZ_CP097255 | ||
| Organism | Enterobacter bugandensis strain CMCC(B)45301 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2721006..2721109 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2721002..2721144 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M1V99_RS13485 (M1V99_13485) | 2716178..2717626 | + | 1449 | WP_207118871.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| M1V99_RS13490 (M1V99_13490) | 2717732..2717971 | + | 240 | WP_008500472.1 | YebV family protein | - |
| M1V99_RS13495 (M1V99_13495) | 2718006..2718650 | - | 645 | WP_182035243.1 | protein-serine/threonine phosphatase | - |
| M1V99_RS13500 (M1V99_13500) | 2718819..2719760 | + | 942 | WP_028013548.1 | VirK/YbjX family protein | - |
| M1V99_RS13505 (M1V99_13505) | 2719933..2720808 | + | 876 | WP_028013549.1 | benzoate transporter | - |
| - | 2721002..2721144 | + | 143 | - | - | Antitoxin |
| - | 2721006..2721109 | - | 104 | - | - | Toxin |
| M1V99_RS13510 (M1V99_13510) | 2721249..2721587 | - | 339 | WP_063155606.1 | YebY family protein | - |
| M1V99_RS13515 (M1V99_13515) | 2721604..2722473 | - | 870 | WP_249488098.1 | copper homeostasis membrane protein CopD | - |
| M1V99_RS13520 (M1V99_13520) | 2722475..2722846 | - | 372 | WP_045260311.1 | CopC domain-containing protein YobA | - |
| M1V99_RS13525 (M1V99_13525) | 2722983..2723213 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| M1V99_RS13530 (M1V99_13530) | 2723324..2723974 | + | 651 | WP_045260312.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| M1V99_RS13535 (M1V99_13535) | 2723999..2724661 | + | 663 | WP_025756911.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T245051 NZ_CP097255:c2721109-2721006 [Enterobacter bugandensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 143 bp
>AT245051 NZ_CP097255:2721002-2721144 [Enterobacter bugandensis]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
