Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4011139..4011284 | Replicon | chromosome |
| Accession | NZ_CP097248 | ||
| Organism | Klebsiella pneumoniae strain NTU107224 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4011175..4011277 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4011139..4011284 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5D84_RS19460 | 4006269..4008329 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| M5D84_RS19465 | 4008333..4008992 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| M5D84_RS19470 | 4009071..4009301 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| M5D84_RS19475 | 4009414..4009788 | + | 375 | WP_023285314.1 | CopC domain-containing protein YobA | - |
| M5D84_RS19480 | 4009792..4010661 | + | 870 | WP_023285313.1 | copper homeostasis membrane protein CopD | - |
| M5D84_RS19485 | 4010678..4011016 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4011139..4011284 | - | 146 | - | - | Antitoxin |
| - | 4011175..4011277 | + | 103 | - | - | Toxin |
| M5D84_RS19490 | 4011652..4011795 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| M5D84_RS19495 | 4011900..4012868 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| M5D84_RS19500 | 4013025..4013678 | + | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| M5D84_RS19505 | 4013675..4013866 | - | 192 | WP_002911395.1 | YebW family protein | - |
| M5D84_RS19510 | 4013964..4014203 | - | 240 | WP_002911393.1 | YebV family protein | - |
| M5D84_RS19515 | 4014319..4015752 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T245029 NZ_CP097248:4011175-4011277 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT245029 NZ_CP097248:c4011284-4011139 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
