Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3884124..3884269 | Replicon | chromosome |
| Accession | NZ_CP097237 | ||
| Organism | Klebsiella pneumoniae strain | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3884160..3884262 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3884124..3884269 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M4268_RS18460 | 3879254..3881314 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| M4268_RS18465 | 3881318..3881977 | - | 660 | WP_043906809.1 | exodeoxyribonuclease X | - |
| M4268_RS18470 | 3882056..3882286 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| M4268_RS18475 | 3882399..3882773 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| M4268_RS18480 | 3882777..3883646 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| M4268_RS18485 | 3883663..3884001 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 3884124..3884269 | - | 146 | - | - | Antitoxin |
| - | 3884160..3884262 | + | 103 | - | - | Toxin |
| M4268_RS18490 | 3884638..3884781 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| M4268_RS18495 | 3884886..3885854 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| M4268_RS18500 | 3886011..3886664 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| M4268_RS18505 | 3886661..3886852 | - | 192 | WP_002911395.1 | YebW family protein | - |
| M4268_RS18510 | 3886950..3887189 | - | 240 | WP_002911393.1 | YebV family protein | - |
| M4268_RS18515 | 3887305..3888738 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T245006 NZ_CP097237:3884160-3884262 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT245006 NZ_CP097237:c3884269-3884124 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
