Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1998857..1999001 | Replicon | chromosome |
| Accession | NC_013716 | ||
| Organism | Citrobacter rodentium ICC168 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1998863..1998966 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1998857..1999001 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ROD_RS09285 | 1993859..1996492 | + | 2634 | WP_012906110.1 | PqiB family protein | - |
| ROD_RS09290 | 1996571..1998010 | + | 1440 | WP_012906111.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ROD_RS09295 | 1998125..1998361 | + | 237 | WP_024132705.1 | DUF1480 family protein | - |
| ROD_RS09300 | 1998464..1998655 | + | 192 | WP_012906113.1 | YebW family protein | - |
| - | 1998857..1999001 | + | 145 | - | - | Antitoxin |
| - | 1998863..1998966 | - | 104 | - | - | Toxin |
| ROD_RS09310 | 1999123..1999461 | - | 339 | WP_012906114.1 | YebY family protein | - |
| ROD_RS09315 | 1999478..2000350 | - | 873 | WP_012906115.1 | copper homeostasis membrane protein CopD | - |
| ROD_RS09320 | 2000353..2000727 | - | 375 | WP_012906116.1 | CopC domain-containing protein YobA | - |
| ROD_RS09325 | 2000864..2001094 | + | 231 | WP_024132706.1 | DNA polymerase III subunit theta | - |
| ROD_RS09330 | 2001203..2001859 | + | 657 | WP_024132707.1 | carbon-nitrogen hydrolase family protein | - |
| ROD_RS09335 | 2001882..2002544 | + | 663 | WP_012906119.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T24499 NC_013716:c1998966-1998863 [Citrobacter rodentium ICC168]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT24499 NC_013716:1998857-1999001 [Citrobacter rodentium ICC168]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGATGACGACGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGATGACGACGCCAGGTTTTCCAGT
