Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1251894..1252039 | Replicon | chromosome |
| Accession | NZ_CP097232 | ||
| Organism | Klebsiella pneumoniae strain 4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1251901..1252003 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1251894..1252039 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M4269_RS06270 | 1247425..1248858 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| M4269_RS06275 | 1248974..1249213 | + | 240 | WP_002911393.1 | YebV family protein | - |
| M4269_RS06280 | 1249311..1249502 | + | 192 | WP_002911395.1 | YebW family protein | - |
| M4269_RS06285 | 1249499..1250152 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| M4269_RS06290 | 1250309..1251277 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| M4269_RS06295 | 1251382..1251525 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 1251894..1252039 | + | 146 | - | - | Antitoxin |
| - | 1251901..1252003 | - | 103 | - | - | Toxin |
| M4269_RS06300 | 1252162..1252500 | - | 339 | WP_002911404.1 | YebY family protein | - |
| M4269_RS06305 | 1252517..1253386 | - | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| M4269_RS06310 | 1253390..1253764 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| M4269_RS06315 | 1253877..1254107 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| M4269_RS06320 | 1254186..1254845 | + | 660 | WP_043906809.1 | exodeoxyribonuclease X | - |
| M4269_RS06325 | 1254849..1256909 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T244983 NZ_CP097232:c1252003-1251901 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT244983 NZ_CP097232:1251894-1252039 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
