Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1466441..1466586 | Replicon | chromosome |
| Accession | NZ_CP097228 | ||
| Organism | Klebsiella pneumoniae strain 5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1466448..1466550 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1466441..1466586 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M4270_RS07295 | 1461972..1463405 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| M4270_RS07300 | 1463521..1463760 | + | 240 | WP_002911393.1 | YebV family protein | - |
| M4270_RS07305 | 1463858..1464049 | + | 192 | WP_002911395.1 | YebW family protein | - |
| M4270_RS07310 | 1464046..1464699 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| M4270_RS07315 | 1464856..1465824 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| M4270_RS07320 | 1465929..1466072 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 1466441..1466586 | + | 146 | - | - | Antitoxin |
| - | 1466448..1466550 | - | 103 | - | - | Toxin |
| M4270_RS07325 | 1466709..1467047 | - | 339 | WP_002911404.1 | YebY family protein | - |
| M4270_RS07330 | 1467064..1467933 | - | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| M4270_RS07335 | 1467937..1468311 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| M4270_RS07340 | 1468424..1468654 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| M4270_RS07345 | 1468733..1469392 | + | 660 | WP_043906809.1 | exodeoxyribonuclease X | - |
| M4270_RS07350 | 1469396..1471456 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T244966 NZ_CP097228:c1466550-1466448 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT244966 NZ_CP097228:1466441-1466586 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
