Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1124847..1124992 | Replicon | chromosome |
| Accession | NZ_CP097220 | ||
| Organism | Klebsiella pneumoniae strain 12 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1124883..1124985 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1124847..1124992 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M4272_RS05290 | 1119977..1122037 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| M4272_RS05295 | 1122041..1122700 | - | 660 | WP_043906809.1 | exodeoxyribonuclease X | - |
| M4272_RS05300 | 1122779..1123009 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| M4272_RS05305 | 1123122..1123496 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| M4272_RS05310 | 1123500..1124369 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| M4272_RS05315 | 1124386..1124724 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1124847..1124992 | - | 146 | - | - | Antitoxin |
| - | 1124883..1124985 | + | 103 | - | - | Toxin |
| M4272_RS05320 | 1125361..1125504 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| M4272_RS05325 | 1125609..1126577 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| M4272_RS05330 | 1126734..1127387 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| M4272_RS05335 | 1127384..1127575 | - | 192 | WP_002911395.1 | YebW family protein | - |
| M4272_RS05340 | 1127673..1127912 | - | 240 | WP_002911393.1 | YebV family protein | - |
| M4272_RS05345 | 1128028..1129461 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T244934 NZ_CP097220:1124883-1124985 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT244934 NZ_CP097220:c1124992-1124847 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
