Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE-Phd
Location 1828927..1829486 Replicon chromosome
Accession NZ_CP097186
Organism Rhodococcus sp. GA1

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag M3330_RS08510 Protein ID WP_024102981.1
Coordinates 1828927..1829205 (-) Length 93 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag M3330_RS08515 Protein ID WP_024102980.1
Coordinates 1829202..1829486 (-) Length 95 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
M3330_RS08480 1824045..1824764 + 720 WP_255028465.1 2OG-Fe(II) oxygenase -
M3330_RS08485 1824801..1825772 - 972 WP_006551850.1 phosphotriesterase -
M3330_RS08490 1825817..1826647 - 831 WP_006551851.1 SDR family oxidoreductase -
M3330_RS08495 1826768..1827430 + 663 WP_255028468.1 alpha-ketoglutarate-dependent dioxygenase AlkB -
M3330_RS08500 1827580..1828332 + 753 WP_064060432.1 cutinase family protein -
M3330_RS08505 1828391..1828870 + 480 WP_006551854.1 MarR family transcriptional regulator -
M3330_RS08510 1828927..1829205 - 279 WP_024102981.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
M3330_RS08515 1829202..1829486 - 285 WP_024102980.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
M3330_RS08520 1829708..1830526 - 819 WP_006551857.1 family 1 encapsulin nanocompartment shell protein -
M3330_RS08525 1830523..1831551 - 1029 WP_033096849.1 Dyp-type peroxidase -
M3330_RS08530 1831628..1833229 - 1602 WP_033096850.1 L-lactate permease -
M3330_RS08535 1833234..1833662 - 429 WP_024102975.1 HIT family protein -
M3330_RS08540 1833659..1834285 - 627 WP_231913210.1 TetR/AcrR family transcriptional regulator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(34-91)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-71)


Sequences

Toxin        


Download         Length: 93 a.a.        Molecular weight: 10268.82 Da        Isoelectric Point: 10.2002

>T244881 WP_024102981.1 NZ_CP097186:c1829205-1828927 [Rhodococcus sp. GA1]
MSTPDHPYRLVMARSAARAMARSLPEKVATAVYEFVTGPLLENPKRVGKPLNPPLAPAYSARRGEYRVLYLIDDANRTVE
VTAISHRADAYR

Download         Length: 279 bp

Antitoxin


Download         Length: 95 a.a.        Molecular weight: 10494.56 Da        Isoelectric Point: 4.2336

>AT244881 WP_024102980.1 NZ_CP097186:c1829486-1829202 [Rhodococcus sp. GA1]
MTTLPVADARAQLSRLVDEAERTHERFEITRNGHRAAVLLGADDYDAMQETIAVLSDTDLLRAHVEGRTEVESGDVVDVQ
ELTQLMRDARSSEE

Download         Length: 285 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References