Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 1136247..1136901 Replicon chromosome
Accession NZ_CP097170
Organism Escherichia coli strain AR13438

Toxin (Protein)


Gene name cptA Uniprot ID S1PAM6
Locus tag M3M51_RS05545 Protein ID WP_000244781.1
Coordinates 1136494..1136901 (+) Length 136 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID S1PPB1
Locus tag M3M51_RS05540 Protein ID WP_000354046.1
Coordinates 1136247..1136513 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
M3M51_RS05520 (1132335) 1132335..1133768 - 1434 WP_001521235.1 6-phospho-beta-glucosidase BglA -
M3M51_RS05525 (1133813) 1133813..1134124 + 312 WP_001182949.1 N(4)-acetylcytidine aminohydrolase -
M3M51_RS05530 (1134288) 1134288..1134947 + 660 WP_000250269.1 hemolysin III family protein -
M3M51_RS05535 (1135024) 1135024..1136004 - 981 WP_000886050.1 tRNA-modifying protein YgfZ -
M3M51_RS05540 (1136247) 1136247..1136513 + 267 WP_000354046.1 FAD assembly factor SdhE Antitoxin
M3M51_RS05545 (1136494) 1136494..1136901 + 408 WP_000244781.1 protein YgfX Toxin
M3M51_RS05550 (1136941) 1136941..1137462 - 522 WP_001521233.1 flavodoxin FldB -
M3M51_RS05555 (1137574) 1137574..1138470 + 897 WP_000806638.1 site-specific tyrosine recombinase XerD -
M3M51_RS05560 (1138495) 1138495..1139205 + 711 WP_001521231.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
M3M51_RS05565 (1139211) 1139211..1140944 + 1734 WP_063117505.1 single-stranded-DNA-specific exonuclease RecJ -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(3-131)

Antitoxin

Flavinator of succinate dehydrogenase

(7-79)


Sequences

Toxin        


Download         Length: 136 a.a.        Molecular weight: 16061.99 Da        Isoelectric Point: 11.5202

>T244836 WP_000244781.1 NZ_CP097170:1136494-1136901 [Escherichia coli]
VVLWQSDLRVSWRAQWLSLLIHGLVAAVILLMPWPLSYTPLWMVLLSLVVFDCVRSQRRINARQGEIRLLMDGRLRWQGQ
EWSIVKAPWMIKSGMMLRLRSDSGKRQHLWLAADSMDEAEWRDLRRILLQQETQR

Download         Length: 408 bp

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10547.12 Da        Isoelectric Point: 5.1599

>AT244836 WP_000354046.1 NZ_CP097170:1136247-1136513 [Escherichia coli]
MDINNKARIHWACRRGMRELDISIMPFFEHEYDSLSDDEKRIFIRLLECDDPDLFNWLMNHGKPADAELEMMVRLIQTRN
RERGPVAI

Download         Length: 267 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB S1PAM6

Antitoxin

Source ID Structure
PDB 6B58
PDB 1X6I
PDB 1X6J
PDB 6C12
AlphaFold DB A0A7U9QD57

References