Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE-Phd
Location 216748..217289 Replicon chromosome
Accession NZ_CP097128
Organism Conexibacter sp. DBS9H8

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag M3M55_RS01025 Protein ID WP_249010966.1
Coordinates 217017..217289 (+) Length 91 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag M3M55_RS01020 Protein ID WP_249010965.1
Coordinates 216748..217020 (+) Length 91 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
M3M55_RS00990 211812..213065 + 1254 WP_249010961.1 tetratricopeptide repeat protein -
M3M55_RS00995 213155..213475 - 321 WP_249010962.1 co-chaperone GroES family protein -
M3M55_RS01000 213488..214102 - 615 WP_249010963.1 FMN-binding negative transcriptional regulator -
M3M55_RS01005 214117..216030 - 1914 WP_249010964.1 glycosyl hydrolase family 79 C-terminal domain-containing protein -
M3M55_RS01010 216165..216395 + 231 WP_249012450.1 hypothetical protein -
M3M55_RS01015 216395..216693 + 299 Protein_200 type II toxin-antitoxin system PemK/MazF family toxin -
M3M55_RS01020 216748..217020 + 273 WP_249010965.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
M3M55_RS01025 217017..217289 + 273 WP_249010966.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
M3M55_RS01030 217434..217676 + 243 WP_249010967.1 hypothetical protein -
M3M55_RS01035 217766..218467 + 702 WP_249010968.1 endonuclease NucS -
M3M55_RS01040 218717..219871 + 1155 WP_249010969.1 transglycosylase family protein -
M3M55_RS01045 219995..221047 - 1053 WP_249012434.1 rod shape-determining protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(10-87)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(3-70)


Sequences

Toxin        


Download         Length: 91 a.a.        Molecular weight: 10118.66 Da        Isoelectric Point: 10.5054

>T244816 WP_249010966.1 NZ_CP097128:217017-217289 [Conexibacter sp. DBS9H8]
MSQKAWGLEIAGPAARDVERLPAKYAAAILTLLPAIAEHPHRLGKPLRRELDGVWSARRGPYRVLYEIDEQRHVVTGVAV
AHRSDAYRPR

Download         Length: 273 bp

Antitoxin


Download         Length: 91 a.a.        Molecular weight: 9723.96 Da        Isoelectric Point: 4.6286

>AT244816 WP_249010965.1 NZ_CP097128:216748-217020 [Conexibacter sp. DBS9H8]
MTETLPLATVKAQFSAIVDRVESEHDRVVVTRNGRAAAVLISTDDLESLEETVAVLSDRVLMARVNEGRRAAQSGDTISL
DELKARLASS

Download         Length: 273 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References