244804

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 790600..791243 Replicon chromosome
Accession NZ_CP097127
Organism Conexibacter sp. S30A1

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag M3M54_RS03915 Protein ID WP_249020878.1
Coordinates 790821..791243 (+) Length 141 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag M3M54_RS03910 Protein ID WP_249020877.1
Coordinates 790600..790815 (+) Length 72 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
M3M54_RS03895 786272..787042 + 771 WP_249020874.1 ABC transporter ATP-binding protein -
M3M54_RS03900 787039..787836 + 798 WP_249020875.1 ABC transporter permease -
M3M54_RS03905 788132..790501 + 2370 WP_249020876.1 MMPL family transporter -
M3M54_RS03910 790600..790815 + 216 WP_249020877.1 CopG family transcriptional regulator Antitoxin
M3M54_RS03915 790821..791243 + 423 WP_249020878.1 PIN domain-containing protein Toxin
M3M54_RS03920 791366..792397 + 1032 WP_249020879.1 3-isopropylmalate dehydrogenase -
M3M54_RS03925 792408..793343 + 936 WP_249020880.1 branched-chain amino acid transaminase -
M3M54_RS03930 793345..794946 + 1602 WP_249020881.1 citramalate synthase -
M3M54_RS03935 794943..796127 + 1185 WP_249020882.1 DegT/DnrJ/EryC1/StrS aminotransferase family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(5-121)

Antitoxin

Ribbon-helix-helix protein, CopG

(4-37)


Sequences

Toxin        


Download         Length: 141 a.a.        Molecular weight: 15178.11 Da        Isoelectric Point: 4.3155

>T244804 WP_249020878.1 NZ_CP097127:790821-791243 [Conexibacter sp. S30A1]
VPTVIADTSALLAFFDASEPDHEAVSEVLAAADALIVSPYVVAELDYLVATRHGVDNELAVLDELAGGAWHLAAFDEQEL
ERARGVIASYKDLEIGVADASIVVLAERHRTRTIVSLDRRHFDVLRPIGGGYFEVLPQAR

Download         Length: 423 bp

Antitoxin


Download         Length: 72 a.a.        Molecular weight: 7686.84 Da        Isoelectric Point: 10.2967

>AT244804 WP_249020877.1 NZ_CP097127:790600-790815 [Conexibacter sp. S30A1]
MEKTTLYLPDDLKVMVKRAAAERGVSEAEIIRESIRRSVGGVRPSARGALYASGRPIARAADELLAGFGER

Download         Length: 216 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References