Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1907048..1907190 | Replicon | chromosome |
| Accession | NZ_CP097107 | ||
| Organism | Citrobacter freundii strain GMU8049 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1907083..1907186 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1907048..1907190 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M3L74_RS09700 | 1902201..1903103 | - | 903 | WP_003844140.1 | diguanylate cyclase | - |
| M3L74_RS09705 | 1903421..1903612 | - | 192 | WP_008322661.1 | hypothetical protein | - |
| M3L74_RS09710 | 1904105..1904695 | - | 591 | WP_032939142.1 | hypothetical protein | - |
| M3L74_RS09715 | 1904850..1905059 | + | 210 | WP_003844137.1 | hypothetical protein | - |
| M3L74_RS09720 | 1905318..1905692 | + | 375 | WP_044711069.1 | CopC domain-containing protein YobA | - |
| M3L74_RS09725 | 1905696..1906568 | + | 873 | WP_049002332.1 | copper homeostasis membrane protein CopD | - |
| M3L74_RS09730 | 1906589..1906927 | + | 339 | WP_003833793.1 | YebY family protein | - |
| - | 1907048..1907190 | - | 143 | - | - | Antitoxin |
| - | 1907083..1907186 | + | 104 | - | - | Toxin |
| M3L74_RS09735 | 1907264..1908349 | - | 1086 | WP_249018434.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| M3L74_RS09740 | 1908318..1908590 | - | 273 | WP_071684411.1 | excisionase | - |
| M3L74_RS09745 | 1908654..1908896 | - | 243 | WP_019076930.1 | DUF4060 family protein | - |
| M3L74_RS09750 | 1908883..1909536 | - | 654 | WP_249018535.1 | hypothetical protein | - |
| M3L74_RS09755 | 1909595..1910707 | - | 1113 | WP_181630814.1 | RecT family recombinase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1894171..1959373 | 65202 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T244787 NZ_CP097107:1907083-1907186 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 143 bp
>AT244787 NZ_CP097107:c1907190-1907048 [Citrobacter freundii]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
