Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1811489..1811757 | Replicon | chromosome |
| Accession | NC_013654 | ||
| Organism | Escherichia coli SE15 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1811527..1811629 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1811489..1811757 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECSF_RS08985 | 1808647..1810086 | + | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ECSF_RS08990 | 1810203..1810439 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ECSF_RS08995 | 1810544..1810735 | + | 192 | WP_001296140.1 | YebW family protein | - |
| ECSF_RS09000 | 1810736..1811392 | - | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| - | 1811489..1811757 | + | 269 | - | - | Antitoxin |
| - | 1811527..1811629 | - | 103 | - | - | Toxin |
| ECSF_RS09010 | 1811787..1812128 | - | 342 | WP_000976472.1 | YebY family protein | - |
| ECSF_RS09015 | 1812141..1813013 | - | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| ECSF_RS09020 | 1813017..1813391 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| ECSF_RS09025 | 1813530..1813760 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ECSF_RS09030 | 1813862..1814518 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| ECSF_RS09035 | 1814542..1815204 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T24477 NC_013654:c1811629-1811527 [Escherichia coli SE15]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT24477 NC_013654:1811489-1811757 [Escherichia coli SE15]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
