Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2459377..2459461 Replicon chromosome
Accession NC_013592
Organism Dickeya dadantii Ech586

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2459377..2459457 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2459377..2459461 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DD586_RS10710 2454821..2456755 + 1935 WP_012884836.1 protein kinase YeaG -
DD586_RS10715 2456774..2458069 + 1296 WP_012884837.1 YeaH/YhbH family protein -
DD586_RS10720 2458163..2458558 - 396 WP_012884838.1 hypothetical protein -
DD586_RS10725 2458869..2459207 + 339 WP_012884839.1 YebY family protein -
- 2459377..2459457 + 81 - - Toxin
- 2459377..2459461 - 85 - - Antitoxin
DD586_RS10730 2459745..2460143 - 399 WP_012884840.1 hypothetical protein -
DD586_RS10735 2460552..2461304 - 753 WP_012884842.1 IclR family transcriptional regulator -
DD586_RS10740 2461707..2462099 + 393 WP_012884843.1 RidA family protein -
DD586_RS10745 2462238..2463074 + 837 WP_012884844.1 transporter substrate-binding domain-containing protein -
DD586_RS10750 2463124..2463864 + 741 WP_012884845.1 amino acid ABC transporter permease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 81 bp

>T24454 NC_013592:2459377-2459457 [Dickeya zeae Ech586]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T

Antitoxin


Download         Length: 85 bp

>AT24454 NC_013592:c2459461-2459377 [Dickeya zeae Ech586]
AGTTAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References