244241

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/-
Location 3905550..3906771 Replicon chromosome
Accession NZ_CP096946
Organism Pseudomonas aeruginosa strain NY5530

Toxin (Protein)


Gene name vapC Uniprot ID A0A0C7CS07
Locus tag M2I93_RS18345 Protein ID WP_003102740.1
Coordinates 3906193..3906771 (+) Length 193 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag M2I93_RS18340 Protein ID WP_003088112.1
Coordinates 3905550..3906104 (+) Length 185 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
M2I93_RS18315 (M2I93_18275) 3901118..3901669 + 552 WP_003102727.1 XRE family transcriptional regulator -
M2I93_RS18320 (M2I93_18280) 3901666..3902064 - 399 WP_003088123.1 NADH-quinone oxidoreductase subunit A -
M2I93_RS18325 (M2I93_18285) 3902077..3902400 - 324 WP_003102734.1 multidrug efflux SMR transporter -
M2I93_RS18330 (M2I93_18290) 3902731..3903192 + 462 WP_003102736.1 (2Fe-2S)-binding protein -
M2I93_RS18335 (M2I93_18295) 3903197..3905392 + 2196 WP_004349295.1 xanthine dehydrogenase family protein molybdopterin-binding subunit -
M2I93_RS18340 (M2I93_18300) 3905550..3906104 + 555 WP_003088112.1 helix-turn-helix transcriptional regulator Antitoxin
M2I93_RS18345 (M2I93_18305) 3906193..3906771 + 579 WP_003102740.1 HD domain-containing protein Toxin
M2I93_RS18350 (M2I93_18310) 3906880..3908067 - 1188 WP_003102741.1 HlyD family efflux transporter periplasmic adaptor subunit -
M2I93_RS18355 (M2I93_18315) 3908057..3910228 - 2172 WP_009876279.1 type I secretion system permease/ATPase -
M2I93_RS18360 (M2I93_18320) 3910218..3911495 - 1278 WP_003102743.1 TolC family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HD domain

(16-170)

Antitoxin

Cro/C1-type helix-turn-helix domain

(14-62)


Sequences

Toxin        


Download         Length: 193 a.a.        Molecular weight: 21869.70 Da        Isoelectric Point: 5.3655

>T244241 WP_003102740.1 NZ_CP096946:3906193-3906771 [Pseudomonas aeruginosa]
MSLELLSNRLEFLREAERLKDVLRSAHTSSGRPESTAEHSWRLCLMALAFEDQLAGLDLGKVLRMCVVHDLGEAIHGDIP
AVEQAAHPDKGEQERADLLQLTRHLDAPLRDRLLALWDEYERGESAEALAVKALDKLETLLQHTQGDNPADFDYAFNLDY
GRRYTDRAPLFKTLRELLDARTRQRLAARRDA

Download         Length: 579 bp

Antitoxin


Download         Length: 185 a.a.        Molecular weight: 20454.63 Da        Isoelectric Point: 8.1590

>AT244241 WP_003088112.1 NZ_CP096946:3905550-3906104 [Pseudomonas aeruginosa]
MTEPLPSSSLGPALRRWRLLHRVKQTHAAELLGVAQSTISRWESGTQALLVEERARLERLLGARLEAAADQALARLVEAN
PQPVHLICDLTHRLLACSPARAAQFGVPLGELLDRSLWPYCSEEILRQEATLEELGWRELLAPPALEFASGANASAIVPI
RRSRCRWTRMTLSDGRAVRLVETL

Download         Length: 555 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0C7CS07

Antitoxin

Source ID Structure

References