244230

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) PumAB/COG3657-dnstrm_HI1420
Location 5884767..5885353 Replicon chromosome
Accession NZ_CP096942
Organism Pseudomonas aeruginosa strain NY5524

Toxin (Protein)


Gene name PumA Uniprot ID G8CP73
Locus tag M2I87_RS28395 Protein ID WP_003120987.1
Coordinates 5885054..5885353 (-) Length 100 a.a.

Antitoxin (Protein)


Gene name PumB Uniprot ID -
Locus tag M2I87_RS28390 Protein ID WP_003448662.1
Coordinates 5884767..5885057 (-) Length 97 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
M2I87_RS28370 (M2I87_28245) 5880343..5882238 + 1896 WP_234493604.1 hypothetical protein -
M2I87_RS28375 (M2I87_28250) 5882235..5884211 + 1977 WP_042931628.1 DEAD/DEAH box helicase -
M2I87_RS28380 5884221..5884355 + 135 WP_033179080.1 hypothetical protein -
M2I87_RS28385 (M2I87_28255) 5884352..5884696 + 345 WP_003448665.1 hypothetical protein -
M2I87_RS28390 (M2I87_28260) 5884767..5885057 - 291 WP_003448662.1 putative addiction module antidote protein Antitoxin
M2I87_RS28395 (M2I87_28265) 5885054..5885353 - 300 WP_003120987.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
M2I87_RS28400 (M2I87_28270) 5885555..5886676 + 1122 WP_003448658.1 TcpQ domain-containing protein -
M2I87_RS28405 (M2I87_28275) 5886676..5888385 + 1710 WP_010792227.1 PilN family type IVB pilus formation outer membrane protein -
M2I87_RS28410 (M2I87_28280) 5888389..5889714 + 1326 WP_003099758.1 type 4b pilus protein PilO2 -
M2I87_RS28415 (M2I87_28285) 5889704..5890237 + 534 WP_003099760.1 type IV pilus biogenesis protein PilP -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Integrative and Conjugative Element - - 5853526..5942128 88602


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Addiction module killer protein, predicted

(3-96)

Antitoxin

Cro/C1-type helix-turn-helix domain

(47-90)


Sequences

Toxin        


Download         Length: 100 a.a.        Molecular weight: 11133.88 Da        Isoelectric Point: 10.4495

>T244230 WP_003120987.1 NZ_CP096942:c5885353-5885054 [Pseudomonas aeruginosa]
MVEVKQTATFMAWESKLKDRRAKAVIAARIFRLANGLPGDVSPVGQGVSELRIHYGPGYRVYFQQRGTEIVILLCGGDKS
SQARDIEMAKRLANEWRPQ

Download         Length: 300 bp

Antitoxin


Download         Length: 97 a.a.        Molecular weight: 10394.91 Da        Isoelectric Point: 4.7527

>AT244230 WP_003448662.1 NZ_CP096942:c5885057-5884767 [Pseudomonas aeruginosa]
MTEQIYDYDPAQALDSPEAMALFIADALDTGDTAYIAKAMGVVARAKGMTELAKETGLAREQLYKSFSERGNPTLKTMLA
VMRALGVDLTARPHAQ

Download         Length: 291 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB G8CP73

Antitoxin

Source ID Structure

References