Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 427393..427594 | Replicon | chromosome |
| Accession | NZ_CP096923 | ||
| Organism | Enterobacter hormaechei strain NY0401 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 427398..427501 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 427393..427594 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M2M22_RS01950 (M2M22_01945) | 423655..425103 | + | 1449 | WP_197736826.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| M2M22_RS01955 (M2M22_01950) | 425208..425447 | + | 240 | WP_006811010.1 | YebV family protein | - |
| M2M22_RS01960 (M2M22_01955) | 425482..426126 | - | 645 | WP_023306475.1 | protein-serine/threonine phosphatase | - |
| M2M22_RS01965 (M2M22_01960) | 426294..427274 | + | 981 | WP_206227748.1 | VirK/YbjX family protein | - |
| M2M22_RS01970 (M2M22_01965) | 427320..427517 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 427393..427594 | + | 202 | - | - | Antitoxin |
| - | 427398..427501 | - | 104 | - | - | Toxin |
| M2M22_RS01975 (M2M22_01970) | 427643..427981 | - | 339 | WP_022648464.1 | YebY family protein | - |
| M2M22_RS01980 (M2M22_01975) | 427998..428867 | - | 870 | WP_063146316.1 | copper homeostasis membrane protein CopD | - |
| M2M22_RS01985 (M2M22_01980) | 428869..429240 | - | 372 | WP_063849168.1 | CopC domain-containing protein YobA | - |
| M2M22_RS01990 (M2M22_01985) | 429378..429608 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| M2M22_RS01995 (M2M22_01990) | 429720..430358 | + | 639 | WP_023300434.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| M2M22_RS02000 (M2M22_01995) | 430383..431045 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T244176 NZ_CP096923:c427501-427398 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT244176 NZ_CP096923:427393-427594 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
