Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/RHH(antitoxin)
Location 141256..141761 Replicon chromosome
Accession NZ_CP096913
Organism Pseudomonas aeruginosa strain NY7610

Toxin (Protein)


Gene name parE Uniprot ID V6A7K8
Locus tag M2J79_RS00645 Protein ID WP_003083773.1
Coordinates 141256..141537 (-) Length 94 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID A0A0H2ZJU8
Locus tag M2J79_RS00650 Protein ID WP_003137009.1
Coordinates 141534..141761 (-) Length 76 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
M2J79_RS00620 (M2J79_00620) 136507..137856 + 1350 WP_003137006.1 C4-dicarboxylate transporter DctA -
M2J79_RS00625 (M2J79_00625) 137905..138591 + 687 WP_003083762.1 FadR/GntR family transcriptional regulator -
M2J79_RS00630 (M2J79_00630) 138692..139426 + 735 WP_003110658.1 GntR family transcriptional regulator -
M2J79_RS00635 (M2J79_00635) 139606..140016 + 411 WP_003110659.1 aegerolysin family protein -
M2J79_RS00640 (M2J79_00640) 140048..140956 - 909 WP_003083769.1 LysR family transcriptional regulator -
M2J79_RS00645 (M2J79_00645) 141256..141537 - 282 WP_003083773.1 type II toxin-antitoxin system toxin ParE Toxin
M2J79_RS00650 (M2J79_00650) 141534..141761 - 228 WP_003137009.1 CopG family ribbon-helix-helix protein Antitoxin
M2J79_RS00655 (M2J79_00655) 141937..142560 - 624 WP_003137011.1 hypothetical protein -
M2J79_RS00660 (M2J79_00660) 142661..143161 + 501 WP_003137013.1 LEA type 2 family protein -
M2J79_RS00665 (M2J79_00665) 143233..143574 + 342 WP_003101229.1 zinc ribbon domain-containing protein YjdM -
M2J79_RS00670 (M2J79_00670) 143656..145083 - 1428 WP_003137015.1 GABA permease -
M2J79_RS00675 (M2J79_00675) 145252..146745 - 1494 WP_003101230.1 CoA-acylating methylmalonate-semialdehyde dehydrogenase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-87)

Antitoxin

Ribbon-helix-helix protein, CopG

(5-42)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10462.19 Da        Isoelectric Point: 10.0435

>T244157 WP_003083773.1 NZ_CP096913:c141537-141256 [Pseudomonas aeruginosa]
MSLKWTRKAAADLDAIYDHYVVLIGPEKALKAVQDIVEQVKPLQQVANQGAGRPSEVPGVRTLTLERWPFSAPFRVKGKE
IQILRIDRVEITP

Download         Length: 282 bp

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8526.56 Da        Isoelectric Point: 5.5740

>AT244157 WP_003137009.1 NZ_CP096913:c141761-141534 [Pseudomonas aeruginosa]
MSTVVSFRADDALVAALDELARATHRDRPYHLRQALAQYLERQQWQVAAIDEGLADANAGRLLEHAEIEKRWGLQ

Download         Length: 228 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6XRW

Antitoxin

Source ID Structure
AlphaFold DB A0A0H2ZJU8

References