Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2195340..2195408 | Replicon | chromosome |
| Accession | NZ_CP096902 | ||
| Organism | Escherichia coli strain RSHH22 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2195340..2195370 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2195340..2195408 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M1Y13_RS10875 | 2190392..2190937 | + | 546 | WP_129541907.1 | tail fiber assembly protein | - |
| M1Y13_RS10880 | 2190961..2192943 | + | 1983 | WP_263536089.1 | prophage tail fiber N-terminal domain-containing protein | - |
| M1Y13_RS10885 | 2192954..2193493 | + | 540 | WP_250143547.1 | DUF4376 domain-containing protein | - |
| M1Y13_RS10890 | 2193486..2193869 | + | 384 | WP_129542098.1 | DUF1353 domain-containing protein | - |
| - | 2195340..2195370 | + | 31 | - | - | Toxin |
| - | 2195340..2195408 | - | 69 | - | - | Antitoxin |
| M1Y13_RS10895 | 2195505..2196161 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| M1Y13_RS10900 | 2196162..2196353 | - | 192 | WP_001296140.1 | YebW family protein | - |
| M1Y13_RS10905 | 2196458..2196694 | - | 237 | WP_001295499.1 | YebV family protein | - |
| M1Y13_RS10910 | 2196812..2198251 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2124175..2211247 | 87072 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
