Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2146194..2146428 | Replicon | chromosome |
| Accession | NZ_CP096902 | ||
| Organism | Escherichia coli strain RSHH22 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2146324..2146427 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2146194..2146428 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M1Y13_RS10525 | 2142749..2143411 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| M1Y13_RS10530 | 2143435..2144091 | - | 657 | WP_242386750.1 | carbon-nitrogen hydrolase family protein YobB | - |
| M1Y13_RS10535 | 2144193..2144423 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| M1Y13_RS10540 | 2144562..2144936 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| M1Y13_RS10545 | 2144940..2145812 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| M1Y13_RS10550 | 2145825..2146166 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2146194..2146428 | - | 235 | - | - | Antitoxin |
| - | 2146324..2146427 | + | 104 | - | - | Toxin |
| M1Y13_RS10555 | 2146559..2147635 | - | 1077 | WP_001189091.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| M1Y13_RS10560 | 2147601..2147882 | - | 282 | WP_001311878.1 | excisionase | - |
| M1Y13_RS10565 | 2147989..2148177 | - | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - | 2147993..2148171 | + | 179 | NuclAT_0 | - | - |
| - | 2147993..2148171 | + | 179 | NuclAT_0 | - | - |
| - | 2147993..2148171 | + | 179 | NuclAT_0 | - | - |
| - | 2147993..2148171 | + | 179 | NuclAT_0 | - | - |
| M1Y13_RS10570 | 2148170..2148364 | - | 195 | WP_129542092.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| M1Y13_RS10575 | 2148397..2149077 | - | 681 | WP_129541926.1 | YqaJ viral recombinase family protein | - |
| M1Y13_RS10580 | 2149074..2149859 | - | 786 | WP_063119826.1 | phage recombination protein Bet | - |
| M1Y13_RS10585 | 2149865..2150161 | - | 297 | WP_129542093.1 | host-nuclease inhibitor Gam family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2124175..2211247 | 87072 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T244096 NZ_CP096902:2146324-2146427 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT244096 NZ_CP096902:c2146428-2146194 [Escherichia coli]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
