Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 758245..758933 Replicon chromosome
Accession NZ_CP096848
Organism Mycobacterium tuberculosis variant bovis strain Mb0486

Toxin (Protein)


Gene name vapC Uniprot ID P9WFB2
Locus tag M1778_RS03515 Protein ID WP_003403386.1
Coordinates 758245..758682 (-) Length 146 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID O06777
Locus tag M1778_RS03520 Protein ID WP_003911263.1
Coordinates 758679..758933 (-) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
M1778_RS03485 (M1778_03485) 754496..755506 + 1011 WP_003911248.1 ABC transporter ATP-binding protein -
M1778_RS03490 (M1778_03490) 755894..756277 - 384 WP_003403365.1 ribonuclease VapC6 -
M1778_RS03495 (M1778_03495) 756372..756527 - 156 WP_003403368.1 type II toxin-antitoxin system VapB family antitoxin -
M1778_RS03500 (M1778_03500) 756603..757319 - 717 WP_003403371.1 CPBP family intramembrane metalloprotease -
M1778_RS03505 (M1778_03505) 757595..757903 - 309 WP_003403376.1 type II toxin-antitoxin system PemK/MazF family toxin -
M1778_RS03510 (M1778_03510) 757890..758135 - 246 WP_003403381.1 ribbon-helix-helix protein, CopG family -
M1778_RS03515 (M1778_03515) 758245..758682 - 438 WP_003403386.1 type II toxin-antitoxin system VapC family toxin Toxin
M1778_RS03520 (M1778_03520) 758679..758933 - 255 WP_003911263.1 antitoxin VapB7 Antitoxin
M1778_RS03525 (M1778_03525) 759047..761410 + 2364 WP_003403397.1 arylsulfatase AtsD -
M1778_RS03530 (M1778_03530) 761473..761799 + 327 WP_003403401.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
M1778_RS03535 (M1778_03535) 761711..762049 + 339 WP_003403405.1 PIN domain-containing protein -
M1778_RS03540 (M1778_03540) 762046..762219 + 174 WP_003898549.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(2-126)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 146 a.a.        Molecular weight: 15245.39 Da        Isoelectric Point: 5.1865

>T244036 WP_003403386.1 NZ_CP096848:c758682-758245 [Mycobacterium tuberculosis variant bovis]
MIVLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDAAALGRVTMPNCSRRYSPSIE
ATSKRGLTLFETTPGLEACDAVLAAVAASAGATALVSADPAFADLSDVVHVIPDAAGMVSLLGDR

Download         Length: 438 bp

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9450.99 Da        Isoelectric Point: 11.7073

>AT244036 WP_003911263.1 NZ_CP096848:c758933-758679 [Mycobacterium tuberculosis variant bovis]
MSMRLAHRLQILLDDECHRRITAVARERGVPVATVVREAIDRGLVSPAGRRKSAGRRLLDAADMSVPEPRELKQELEALR
ARRG

Download         Length: 255 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U4BSW5

Antitoxin

Source ID Structure
AlphaFold DB A0A806JQG1

References