Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 3543792..3544419 Replicon chromosome
Accession NC_013421
Organism Pectobacterium wasabiae WPP163

Toxin (Protein)


Gene name Hha Uniprot ID C6DB72
Locus tag PECWA_RS15925 Protein ID WP_005976087.1
Coordinates 3544216..3544419 (+) Length 68 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID C6DB73
Locus tag PECWA_RS15920 Protein ID WP_005976089.1
Coordinates 3543792..3544160 (+) Length 123 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PECWA_RS15910 3539263..3542391 + 3129 WP_015730969.1 multidrug efflux RND transporter permease subunit -
PECWA_RS15915 3542624..3542872 + 249 WP_015730970.1 type B 50S ribosomal protein L31 -
PECWA_RS23505 3542890..3543033 + 144 WP_005976091.1 type B 50S ribosomal protein L36 -
PECWA_RS15920 3543792..3544160 + 369 WP_005976089.1 Hha toxicity modulator TomB Antitoxin
PECWA_RS15925 3544216..3544419 + 204 WP_005976087.1 hemolysin expression modulator Hha Toxin
PECWA_RS15930 3545147..3545467 + 321 WP_005976085.1 MGMT family protein -
PECWA_RS15935 3545487..3546071 - 585 WP_015730971.1 YbaY family lipoprotein -
PECWA_RS15940 3546282..3547145 + 864 WP_014700820.1 acyl-CoA thioesterase II -
PECWA_RS15945 3547263..3548549 - 1287 WP_014700821.1 ammonium transporter AmtB -
PECWA_RS15950 3548589..3548927 - 339 WP_002208627.1 P-II family nitrogen regulator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(8-64)

Antitoxin

Biofilm formation regulator YbaJ

(1-118)


Sequences

Toxin        


Download         Length: 68 a.a.        Molecular weight: 8145.52 Da        Isoelectric Point: 8.9008

>T24394 WP_005976087.1 NC_013421:3544216-3544419 [Pectobacterium parmentieri WPP163]
MKKIDYLMRLRKCTTIDTLERVIEKNKYELSNDELEMFFSAADHRLAELTMNKLYDKVPTAVWRYVR

Download         Length: 204 bp

>T24394 NC_013421:3544216-3544419 [Pectobacterium parmentieri WPP163]
ATGAAAAAAATCGACTATTTGATGCGTTTGCGTAAATGCACAACGATTGACACTCTCGAACGCGTTATTGAAAAAAACAA
GTATGAACTCTCCAATGATGAACTGGAGATGTTCTTTTCTGCAGCCGATCATCGCCTGGCAGAGTTGACGATGAACAAAC
TCTACGACAAAGTTCCTACCGCAGTATGGCGATACGTCCGTTAA

Antitoxin


Download         Length: 123 a.a.        Molecular weight: 14032.77 Da        Isoelectric Point: 4.4787

>AT24394 WP_005976089.1 NC_013421:3543792-3544160 [Pectobacterium parmentieri WPP163]
MDEYTPKHYDIAQLRFLCENLCDESIATLGDSSHGWVNDPTSAINLQLNELIEHIATFILTFKIKYPNESELSEQVEKYL
DDTYVLFSNYGINDAELRRWQKSKAKLFGMFSGENVCTPAKT

Download         Length: 369 bp

>AT24394 NC_013421:3543792-3544160 [Pectobacterium parmentieri WPP163]
ATGGATGAGTACACACCAAAGCATTATGATATTGCCCAACTCAGATTCTTATGTGAGAATCTGTGTGATGAGAGCATAGC
AACGTTAGGCGATAGCAGTCACGGCTGGGTCAATGATCCAACTTCTGCGATCAATCTCCAATTAAATGAGCTTATTGAGC
ATATCGCTACGTTTATTCTCACATTTAAAATAAAATACCCTAACGAAAGTGAGCTCTCAGAGCAGGTTGAAAAATATTTG
GATGATACTTACGTCTTGTTTAGCAACTATGGTATTAATGACGCTGAACTACGACGCTGGCAGAAGTCCAAAGCAAAATT
ATTCGGAATGTTCTCAGGGGAGAACGTCTGTACGCCTGCTAAAACTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A1D7Z3F0

Antitoxin

Source ID Structure
AlphaFold DB A0A1D7Z3G5

References