Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) vapBC/VapC-VapB
Location 3022395..3023074 Replicon chromosome
Accession NZ_CP096843
Organism Mycobacterium tuberculosis variant bovis strain Mb3602

Toxin (Protein)


Gene name vapC Uniprot ID P9WF90
Locus tag M1781_RS14295 Protein ID WP_003414059.1
Coordinates 3022395..3022811 (-) Length 139 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID G0TF64
Locus tag M1781_RS14300 Protein ID WP_003414061.1
Coordinates 3022808..3023074 (-) Length 89 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
M1781_RS14275 (M1781_14280) 3018447..3019349 - 903 WP_003900564.1 4-hydroxy-tetrahydrodipicolinate synthase -
M1781_RS14280 (M1781_14285) 3019418..3020170 - 753 WP_003899465.1 FAD-dependent thymidylate synthase -
M1781_RS14285 (M1781_14295) 3020414..3020689 - 276 WP_003414055.1 type I restriction endonuclease subunit S -
M1781_RS14290 (M1781_14300) 3020686..3022308 - 1623 WP_003414057.1 class I SAM-dependent DNA methyltransferase -
M1781_RS14295 (M1781_14305) 3022395..3022811 - 417 WP_003414059.1 type II toxin-antitoxin system toxin ribonuclease C21 Toxin
M1781_RS14300 (M1781_14310) 3022808..3023074 - 267 WP_003414061.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin
M1781_RS14305 (M1781_14315) 3023100..3023495 - 396 WP_003414064.1 type II toxin-antitoxin system VapC family toxin -
M1781_RS14310 (M1781_14320) 3023492..3023761 - 270 WP_003414066.1 type II toxin-antitoxin system VapB family antitoxin -
M1781_RS14315 (M1781_14325) 3023771..3024865 - 1095 WP_003414068.1 restriction endonuclease subunit S -
M1781_RS14320 (M1781_14330) 3024862..3025281 - 420 Protein_2825 winged helix-turn-helix domain-containing protein -
M1781_RS14325 (M1781_14335) 3025280..3025354 + 75 Protein_2826 hypothetical protein -
M1781_RS14330 (M1781_14340) 3025355..3025834 - 480 WP_003414073.1 dihydrofolate reductase -
M1781_RS14335 (M1781_14345) 3025905..3026705 - 801 WP_003911953.1 thymidylate synthase -
M1781_RS14340 (M1781_14350) 3026861..3027598 + 738 WP_003414079.1 dienelactone hydrolase family protein -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(5-123)

Antitoxin

(16-56)


Sequences


Toxin        


Download         Length: 139 a.a.        Molecular weight: 15773.00 Da        Isoelectric Point: 7.1294

>T243775 WP_003414059.1 NZ_CP096843:c3022811-3022395 [Mycobacterium tuberculosis variant bovis]
MTTRYLLDKSAAYRAHLPAVRHRLEPLMERGLLARCGITDLEFGVSARSREDHRTLGTYRRDALEYVNTPDTVWVRAWEI
QEALTDKGFHRSVKIPDLIIAAVAEHHGIPVMHYDQDFERIAAITRQPVEWVVAPGTA

Download         Length: 417 bp

>T243775 NZ_OX461106:38531-38842 [Serratia proteamaculans]
GTGCATGTAATTAGCAGACAGCCGTTTAACGAGGCTGCCGGTAAATACCCTAATAGCGCATTGGCGCTTCTGGATTTGAT
GCGGGTTCTGGAAAAAAAGACCTTCAACAGCCCGGATGAAATGAAAAGAGCGATCCCGTCACTGGATAACTTCAAGTACC
GTAAAAAGTGGTGGGTTATCGATGTGTCCGGCAATACGCTGCGGCTTATGGCCTTCATTGACTTTGAAAAACAAAAGGTT
TTTGTTAAGCACATTGCGACTCATGCCGAATACGACAAGTTAACCAAGTATTATAGGGAGCATAAAGAATGA

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 9493.77 Da        Isoelectric Point: 7.2783

>AT243775 WP_003414061.1 NZ_CP096843:c3023074-3022808 [Mycobacterium tuberculosis variant bovis]
MHRGYALVVCSPGVTRTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLMNRMAENATGTQDEALVNAMWR
DGHPENTA

Download         Length: 267 bp

>AT243775 NZ_OX461106:38839-39282 [Serratia proteamaculans]
ATGACTGTTGCCACTCATATCGACGCCGCCAGTGCCGAAGGCATGATCGCGACATTTGCCAACGCGGTGAAATGCATTCC
TCTGATGACGGGTGATAAAAGCGAGGCTGAATACAAAAAAGCGCTTGAGCTGATTGAGTATCTTGTCGATCGCGACGAGC
TGAGCAACCCGCTTTTTGAACCGCTTGCGGCCAAAATTACAGAGTATGAAAACAGCGCCCCGGAATTTGAGGCGTTTAAC
CGCCGCTTGGCGGAGATCCCTACCGGGGTCGCCGCGTTGCGTACCCTGATGGATCAGCATGGTTTGAAAGCGGCTGATCT
GGAAGATGAATTGGGGTCTAAAAGTAATGTCAGTAACATTCTCAGTGGTCGCCGTGCGTTGACTGTGCAGCACATTAAGG
CGCTGGCGACGCGTTTTGATGTCCCTGCTGATTTGTTTATCTGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
PDB 5SV2


Antitoxin

Source ID Structure
AlphaFold DB G0TF64

References