243695

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/LOTUS_5_Limkain_b1(toxin)
Location 1574532..1575187 Replicon chromosome
Accession NZ_CP096842
Organism Mycobacterium tuberculosis variant bovis strain Mb3114

Toxin (Protein)


Gene name vapC Uniprot ID A0A7U4FAR1
Locus tag M1772_RS07455 Protein ID WP_003407268.1
Coordinates 1574532..1574933 (-) Length 134 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID G0TIK2
Locus tag M1772_RS07460 Protein ID WP_003407272.1
Coordinates 1574930..1575187 (-) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
M1772_RS07440 (M1772_07440) 1570376..1571761 - 1386 WP_003407260.1 cytochrome P450 -
M1772_RS07445 (M1772_07445) 1571839..1572873 + 1035 WP_003407264.1 AraC family transcriptional regulator -
M1772_RS07450 (M1772_07450) 1572919..1574277 - 1359 WP_010950541.1 PE family protein -
M1772_RS07455 (M1772_07455) 1574532..1574933 - 402 WP_003407268.1 type II toxin-antitoxin system VapC family toxin Toxin
M1772_RS07460 (M1772_07460) 1574930..1575187 - 258 WP_003407272.1 CopG family transcriptional regulator Antitoxin
M1772_RS07465 (M1772_07465) 1575270..1576229 - 960 WP_003407276.1 alpha/beta hydrolase -
M1772_RS07470 (M1772_07470) 1576254..1577216 - 963 WP_003407279.1 alpha/beta hydrolase -
M1772_RS07475 (M1772_07475) 1577215..1577952 + 738 WP_031647000.1 lysoplasmalogenase -
M1772_RS07480 (M1772_07480) 1578033..1580000 + 1968 WP_003407285.1 primosomal protein N' -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(2-108)

Antitoxin

Ribbon-helix-helix protein, CopG

(3-39)


Sequences

Toxin        


Download         Length: 134 a.a.        Molecular weight: 14894.39 Da        Isoelectric Point: 11.6897

>T243695 WP_003407268.1 NZ_CP096842:c1574933-1574532 [Mycobacterium tuberculosis variant bovis]
MILVDSDVLIAHLRGVVAARDWLVSARKDGPLAISVVSTAELIGGMRTAERREVWRLLASFRVQPATEVIARRAGDMMRR
YRRSHNRIGLGDYLIAATADVQGLQLATLNVWHFPMFEQLKPPFAVPGHRPRA

Download         Length: 402 bp

>T243695 NZ_OX458335:c2157956-2157672 [Pseudomonas syringae pv. tomato]
ATGCAGGTTGAATGGCTAAAAACAGCATTAAAAAACCTGGATGATGAAGCCGCCTACATCTCGCTAGAAAATCCGGCTGC
TGCGGTTGCTTTCGTAGAAGCAATACAAATAAGCGTAAAGCAGCTCGCAAGCTTTCCGGCCCTAGGCCGAGAGGGACGAA
TTGCTGGCACCAGAGAATGGCCTTTGCCAGACTGGCCTTACCTGATTCCATACCGCATCCGTAACGGCCGATTACAGGTT
CTGCGGATTTTCCACACGAGAAGGCAGTCGCCGTTGGTGTGGTAA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9443.58 Da        Isoelectric Point: 6.4631

>AT243695 WP_003407272.1 NZ_CP096842:c1575187-1574930 [Mycobacterium tuberculosis variant bovis]
MKRTNIYLDEEQTASLDKLAAQEGVSRAELIRLLLNRALTTAGDDLASDLQAINDSFGTLRHLDPPVRRSGGREQHLAQV
WRATS

Download         Length: 258 bp

>AT243695 NZ_OX458335:c2158185-2157946 [Pseudomonas syringae pv. tomato]
ATGTCCGTTATGTCTCTACGCCTGCCGGACGAGATGGCAGATACCCTTGCACACCTCGCCAAAGCGACCGGCCGCAGCAA
GTCGTTTTTGGCCTTGAACGCATTACGTGAATACTTGACTCGCGAAGCCTGGCAGATTGCCGAAATTCAGCGTGCAATTG
AAGAAGCAGACGCGGGCGAGTTCGCAAGTGAAGAAGATGTAAAGGCAGTGATGAATAAATGGGCGAACAATGCAGGTTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U4FAR1

Antitoxin

Source ID Structure
AlphaFold DB G0TIK2

References