243694

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) PhRel-ATphRel/-
Location 1540538..1541588 Replicon chromosome
Accession NZ_CP096842
Organism Mycobacterium tuberculosis variant bovis strain Mb3114

Toxin (Protein)


Gene name phRel Uniprot ID G0TIH2
Locus tag M1772_RS07305 Protein ID WP_003407164.1
Coordinates 1540538..1541359 (+) Length 274 a.a.

Antitoxin (Protein)


Gene name ATphRel Uniprot ID A0A7U4BTV8
Locus tag M1772_RS07310 Protein ID WP_003407167.1
Coordinates 1541352..1541588 (+) Length 79 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
M1772_RS07285 (M1772_07285) 1536096..1536758 - 663 WP_010950531.1 hypothetical protein -
M1772_RS07290 (M1772_07290) 1536755..1537540 - 786 WP_003407157.1 membrane protein -
M1772_RS07295 (M1772_07295) 1537831..1539792 - 1962 WP_010950533.1 sigma-F factor regulator -
M1772_RS07300 (M1772_07300) 1539931..1540317 - 387 WP_003407162.1 anti-sigma-F factor antagonist RsfA -
M1772_RS07305 (M1772_07305) 1540538..1541359 + 822 WP_003407164.1 GTP pyrophosphokinase family protein Toxin
M1772_RS07310 (M1772_07310) 1541352..1541588 + 237 WP_003407167.1 hypothetical protein Antitoxin
M1772_RS07315 (M1772_07315) 1541660..1542865 - 1206 WP_003918234.1 serine hydrolase domain-containing protein -
M1772_RS07320 (M1772_07320) 1543168..1543953 + 786 WP_003407180.1 lipoprotein LprF -
M1772_RS07325 (M1772_07325) 1544149..1545619 + 1471 Protein_1442 cytochrome b5 domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

RelA/SpoT

(76-174)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 274 a.a.        Molecular weight: 30100.10 Da        Isoelectric Point: 5.8187

>T243694 WP_003407164.1 NZ_CP096842:1540538-1541359 [Mycobacterium tuberculosis variant bovis]
VVVALVGSAIVDLHSRPPWSNNAVRRLGVALRDGVDPPVDCPSYAEVMLWHADLAAEVQDRIEGRSWSASELLVTSRAKS
QDTLLAKLRRRPYLQLNTIQDIAGVRIDADLLLGEQTRLAREIADHFGADQPAIHDLRDHPHAGYRAVHVWLRLPAGRVE
IQIRTILQSLWANFYELLADAYGRGIRYDERPEQLAAGVVPAQLQELVGVMQDASADLAMHEAEWQHCAEIEYPGQRAMA
LGEASKNKATVLATTKFRLERAINEAESAGGGG

Download         Length: 822 bp

>T243694 NZ_OX458335:c1096687-1096283 [Pseudomonas syringae pv. tomato]
ATGCTCAAATACATGCTCGACACCAATATCTGCATCTTCACTATCAAGAACAAGCCGGTGTCGGTACGTGAGGCCTTCAA
CCTTCATCACGGGCAGCTGTGTATCAGCGCGATCACGTTGATGGAGCTTGTCTACGGCGCAGAAAAGTCTTCCAGCCCCG
AAAGAAATCTTGCTGTTGTAGAAGGTTTTGCAGCGCGTCTTGAATTGCTTCCCTACGATAGCGCCGCCGCGGCTCACACC
GGCATGATCAGAGCCGAGCTGGCCAGAGCGGGTACACCGATTGGCCCGTACGATCAAATGATTGCAGGACATGCCCGCTC
TCTTGGCCTCGTGGTCATCACCAACAACCAGCGTGAATTCCAGCGCGTCGAGGGGCTGAGGGTAGAAGACTGGGTAAGCC
AATGA

Antitoxin


Download         Length: 79 a.a.        Molecular weight: 8830.90 Da        Isoelectric Point: 7.3178

>AT243694 WP_003407167.1 NZ_CP096842:1541352-1541588 [Mycobacterium tuberculosis variant bovis]
VGEVAGYVVEYNRRTHVRRITEFATPQEAMEHRLKLEAERTDSNIEIVALVSKSLGTLKQTHSRYFTGEELNVGNGAR

Download         Length: 237 bp

>AT243694 NZ_OX458335:c1096917-1096687 [Pseudomonas syringae pv. tomato]
ATGGAACAATCCACAGTCTTCAAAAGCAATCGAAGTCAGGCTGTTCGACTTCCAAAAGCGGTGGCATTGCCCGACGACGT
GAAACGGGTAGACGTCGTAGCAGTGGGCAGGACACGCATCATTTCCCCTGCTGGTGAAATGTGGAACAGTTGGTTCGATG
GTGAAAGTGTCAGTGATGACTTCATGGCAGAGCGCGAGCAGCCAGTTGAACAACTGCGCGAATCACTCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB G0TIH2

Antitoxin

Source ID Structure
AlphaFold DB A0A7U4BTV8

References